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+ . /home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ PATH=/home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(jenkins-borg-release2F3.3-11) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(jenkins-borg-release2F3.3-11) '
++ export VIRTUAL_ENV_PROMPT
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ CMAKE_PREFIX_PATH=/home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11:/opt/boost
+ export CMAKE_PREFIX_PATH
+ bash build.sh --deprecated --python --use-system-boost=/opt/boost --use-system-hdf5 --native --purge --extra-flags '-DINSTALL_PYTHON_LOCAL=OFF -DCMAKE_INSTALL_PREFIX=/home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11'
Ensure the current directory is ARES
-- Python virtual environment detected: installation default in /home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11

Summary of CMAKE_FLAGS:
   -DBUILD_PYTHON_EXTENSION:BOOL=ON
   -DINTERNAL_BOOST:BOOL=OFF
   -DBOOST_ROOT=/opt/boost
   -DINTERNAL_HDF5:BOOL=OFF
   -DUSE_NATIVE_ARCH:BOOL=ON
   -DINSTALL_PYTHON_LOCAL=OFF
   -DCMAKE_INSTALL_PREFIX=/home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11
   -DCFITSIO_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/cfitsio_cfitsio-4.0.0.tar.gz
   -DLIBSHARP_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/libsharp_1ea651d59b8463f1ddcfa3a4fbd30555c1b101af.zip
   -DHEALPIX_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/healpix_healpix_cxx-3.82.0.tar.gz
   -DBACKTRACE_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/backtrace_2446c66076480ce07a6bd868badcbceb3eeecc2e.tar.gz
   -DEIGEN_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/eigen_eigen-3.4.0.tar.bz2
   -DPYBIND11_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/pybind11_v2.11.1.tar.gz
   -DR3D_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/r3d_b3eef85ae5dc111d0148491772e0820406cfe0ea.zip
   -DANKRL_NANOBENCH_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/ANKRL_NANOBENCH_URL_v4.3.9.tar.gz
   -DGSL_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/gsl_gsl-2.3.tar.gz
   -DFFTW_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/fftw_fftw-3.3.10.tar.gz
   -DCLASS_CODE_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/CLASS_CODE_URL_v3.2.0.tar.gz
   -DTBB_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/tbb_v2021.7.0.tar.gz
   -DXTL_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/xtl_0.7.5.tar.gz
   -DXTENSOR_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/xtensor_0.24.6.tar.gz
   -DXSIMD_URL:URL=file:///build/jenkins/workspace/borg_release_3.3/downloads/xsimd_10.0.0.tar.gz
   -DBORG_DEPRECATED_MODULES:BOOL=ON
   -DCONTEXT_TIMER:BOOL=ON
   -DUSE_XTENSOR:BOOL=ON
   -DUSE_TBB:BOOL=ON
   -DARES_PREFIX_PATH=/home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11:/opt/boost
   -DCMAKE_BUILD_TYPE=Release
   -DCMAKE_C_COMPILER=/usr/bin/cc
   -DCMAKE_CXX_COMPILER=/usr/bin/c++
   -DCMAKE_CUDA_HOST_COMPILER=/usr/bin/c++
   -DINTERNAL_XTENSOR:BOOL=ON
   -DCMAKE_INSTALL_PREFIX=/home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11
-- Found: /usr/bin/cc
-- Found: /usr/bin/c++
-- Found: cmake
-- Found: autoconf
-- Found: automake
-- Found: patch
-- Found: pkg-config
-- The CXX compiler identification is GNU 11.4.0
-- The C compiler identification is GNU 11.4.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") 
-- Performing Test COMPILER_SUPPORTS_MARCH_NATIVE
-- Performing Test COMPILER_SUPPORTS_MARCH_NATIVE - Success
-- Compiler ID is: C -> GNU, CXX -> GNU
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.69") found components: random chrono regex system program_options timer stacktrace_basic stacktrace_backtrace stacktrace_addr2line 
-- Boost version 1.74.0
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: CXX 
-- Used FFTW libraries: /build/jenkins/workspace/borg_release_3.3/build/ext_install/lib/libfftw3_omp.a;/build/jenkins/workspace/borg_release_3.3/build/ext_install/lib/libfftw3.a
-- Deploy target = CMAKE_OSX_DEPLOYMENT_TARGET:STRING=
-- pybind11 v2.11.1 
-- Found PythonInterp: /home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11/bin/python3 (found suitable version "3.10.12", minimum required is "3.6") 
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.10.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- C compiler version: 11.4.0
-- C++ compiler Version: 11.4.0
-- ARES modules found:
--   demo (do not build)
-- Registering forward model libLSS/physics/forwards/primordial.hpp
-- Registering forward model libLSS/physics/forwards/transfer_ehu.hpp
-- Registering likelihood libLSS/samplers/borg/borg_oct_likelihood.hpp
-- Registering likelihood libLSS/samplers/borg/borg_oct_likelihood_marg.hpp
-- Registering forward model libLSS/physics/forwards/borg_lpt_neutrino.hpp
-- Registering forward model libLSS/physics/forwards/patch_model.hpp
-- Registering forward model libLSS/physics/forwards/primordialv2.hpp
-- Registering forward model libLSS/physics/forwards/primordial_as.hpp
-- Registering forward model libLSS/physics/forwards/transfer_ehuv2.hpp
-- Registering forward model libLSS/physics/forwards/transfer_class.hpp
-- Registering forward model libLSS/physics/forwards/fnl.hpp
-- Registering forward model libLSS/physics/hades_pt.hpp
-- Registering forward model libLSS/physics/haar.hpp
-- Registering forward model libLSS/physics/hades_log.hpp
-- Registering forward model libLSS/physics/forwards/upgrade.hpp
-- Registering forward model libLSS/physics/forwards/transfer.hpp
-- Registering forward model libLSS/physics/forwards/borg_lpt.hpp
-- Registering forward model libLSS/physics/forwards/borg_qlpt.hpp
-- Registering forward model libLSS/physics/forwards/borg_qlpt_rsd.hpp
-- Registering forward model libLSS/physics/forwards/borg_2lpt.hpp
-- Registering forward model libLSS/physics/forwards/borg_multi_pm.hpp
-- Registering forward model libLSS/physics/forwards/borg_multi_pm_tile.hpp
-- Registering forward model libLSS/physics/forwards/downgrade.hpp
-- Registering forward model libLSS/physics/forwards/softplus.hpp
-- Registering forward model libLSS/physics/forwards/enforceMass.hpp
-- Registering forward model libLSS/physics/forwards/adapt_generic_bias.hpp
-- Registering forward model libLSS/physics/forwards/altair_ap.hpp
-- Registering forward model libLSS/physics/forwards/kappa_sphere.hpp
-- Registering likelihood libLSS/samplers/hades/hades_linear_likelihood.hpp
-- Registering likelihood libLSS/samplers/lensing/hades_lensing_likelihood.hpp
-- Registering likelihood libLSS/samplers/reduced_shear/hades_reduced_shear_likelihood.hpp
-- Registering likelihood libLSS/samplers/borg/borg_poisson_likelihood.hpp
-- Registering likelihood libLSS/samplers/borg/borg_null_likelihood.hpp
-- Registering likelihood libLSS/samplers/borg/borg_studentT_likelihood.hpp
-- Registering likelihood libLSS/samplers/generic/generic_registry.hpp
-- Building shared
-- ARES deps are : cfitsio;healpix;backtrace;eigen;gsl;fftw;cosmotool;class_code;tbb;xtensor;xtl;tbb;xsimd
-- Install shared is ON
-- INCLUDE_PATH=/build/jenkins/workspace/borg_release_3.3/build;/build/jenkins/workspace/borg_release_3.3/build/_deps/r3d-src
-- Extra python code: 
-- Docfiles= /build/jenkins/workspace/borg_release_3.3/build
-- System python site: /home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11/lib/python3.10/site-packages
-- User python site: /home/jenkins-agent/.local/lib/python3.10/site-packages
-- Python install location: /home/jenkins-agent/work/workspace/borg_release_3.3/jenkins-borg-release2F3.3-11/lib/python3.10/site-packages
-- HADES did not find JULIA
-- Julia missing, Hades_Julia disabled
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    ANKRL_NANOBENCH_URL


-- Build files have been written to: /build/jenkins/workspace/borg_release_3.3/build
------------------------------------------------------------------

Configuration done.
Move to /build/jenkins/workspace/borg_release_3.3/build and type 'make' now.
Please check the configuration of your MPI C compiler. You may need
to set an environment variable to use the proper compiler.

Some example (for SH/BASH shells):
- OpenMPI:
    OMPI_CC=/usr/bin/cc
    OMPI_CXX=/usr/bin/c++
    export OMPI_CC OMPI_CXX
- IntelMPI:
    I_MPI_CC=/usr/bin/cc
    I_MPI_CXX=/usr/bin/c++
    export I_MPI_CC I_MPI_CXX
------------------------------------------------------------------