Skipping 2,800 KB.. Full Log

[ 44%] Linking CXX executable testInterpolate
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[ 46%] Building CXX object sample/CMakeFiles/testkd.dir/testkd.cpp.o
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[ 57%] Building CXX object sample/CMakeFiles/testNewton.dir/testNewton.cpp.o
[ 59%] Linking CXX executable testNewton
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[ 60%] Building CXX object sample/CMakeFiles/testPool.dir/testPool.cpp.o
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[ 63%] Building CXX object sample/CMakeFiles/testReadFlash.dir/testReadFlash.cpp.o
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[ 68%] Linking CXX executable testEskow
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[ 69%] Building CXX object sample/CMakeFiles/testAlgo.dir/testAlgo.cpp.o
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[ 73%] Linking CXX executable testBSP
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[ 75%] Building CXX object sample/CMakeFiles/test_cosmopower.dir/test_cosmopower.cpp.o
[ 76%] Linking CXX executable test_cosmopower
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[ 78%] Building CXX object sample/CMakeFiles/simple3DFilter.dir/simple3DFilter.cpp.o
#  compiling libsharp/sharp_testsuite.c
#  creating library $SRC_DIR/build/external_build/cosmotool-prefix/src/cosmotool-build/external_build/sharp-prefix/src/sharp/auto/lib/libsharp.a
#  compiling libfftpack/fftpack.c
[ 79%] Linking CXX executable simple3DFilter
[ 79%] Built target simple3DFilter
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/shared_ptr.hpp:17,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/sphSmooth.hpp:38,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/sample/simpleDistanceFilter.cpp:5:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:30,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/healpix.hpp:43,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/sample/test_healpix_calls.cpp:37:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/healpix.hpp:46:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/base_types.hpp:163:8: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  163 |        throw(std::bad_cast) = 0;
      |        ^~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/healpix.hpp:53:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/details/healpix_map.hpp:67:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   67 |       throw(std::bad_cast)
      |       ^~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/healpix.hpp:54:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/details/healpix_alms.hpp:92:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   92 |       throw(std::bad_cast)
      |       ^~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/healpix.hpp:56:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/details/healpix_spectrum.hpp: In instantiation of 'void CosmoTool::HealpixSpectrum<T>::sqrt() [with T = double]':
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/details/healpix_spectrum.hpp:77:10:   required from here
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/src/fourier/details/healpix_spectrum.hpp:78:76: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = double; _Result = double]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
   78 |       std::transform(cls.begin(), cls.end(), cls.begin(), std::ptr_fun<T,T>(std::sqrt));
      |                                                           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/include/c++/12.2.0/string:48,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/include/c++/12.2.0/bits/locale_classes.h:40,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/include/c++/12.2.0/bits/ios_base.h:41,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/include/c++/12.2.0/ios:42,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/include/c++/12.2.0/ostream:38,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/include/c++/12.2.0/iostream:39,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool/sample/test_healpix_calls.cpp:36:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/include/c++/12.2.0/bits/stl_function.h:1126:5: note: declared here
 1126 |     ptr_fun(_Result (*__x)(_Arg))
      |     ^~~~~~~
#  compiling libfftpack/bluestein.c
#  compiling libfftpack/ls_fft.c
#  compiling c_utils/c_utils.c
#  compiling c_utils/walltime_c.c
#  compiling c_utils/memusage.c
#  creating library $SRC_DIR/build/external_build/cosmotool-prefix/src/cosmotool-build/external_build/sharp-prefix/src/sharp/auto/lib/libfftpack.a
[ 81%] Building CXX object sample/CMakeFiles/simpleDistanceFilter.dir/simpleDistanceFilter.cpp.o
#  creating library $SRC_DIR/build/external_build/cosmotool-prefix/src/cosmotool-build/external_build/sharp-prefix/src/sharp/auto/lib/libc_utils.a
#  linking C binary $SRC_DIR/build/external_build/cosmotool-prefix/src/cosmotool-build/external_build/sharp-prefix/src/sharp/auto/bin/sharp_testsuite
[ 82%] Performing install step for 'sharp'
No install
[ 84%] Completed 'sharp'
[ 84%] Built target sharp
[ 85%] Building CXX object sample/CMakeFiles/gadgetToArray.dir/gadgetToArray.cpp.o
[ 86%] Linking CXX executable gadgetToArray
[ 86%] Built target gadgetToArray
[ 88%] Building CXX object sample/CMakeFiles/testHDF5.dir/testHDF5.cpp.o
[ 89%] Linking CXX executable simpleDistanceFilter
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[ 91%] Building CXX object sample/CMakeFiles/graficToDensity.dir/graficToDensity.cpp.o
[ 92%] Linking CXX executable graficToDensity
[ 92%] Built target graficToDensity
[ 94%] Building CXX object sample/CMakeFiles/test_special.dir/test_special.cpp.o
[ 95%] Linking CXX executable testHDF5
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[ 97%] Building CXX object sample/CMakeFiles/test_healpix_calls.dir/test_healpix_calls.cpp.o
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[ 98%] Built target test_special
[100%] Linking CXX executable test_healpix_calls
[100%] Built target test_healpix_calls
[ 28%] Performing install step for 'cosmotool'
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Install the project...
-- Install configuration: ""
-- Installing: $SRC_DIR/build/ext_install/lib/libCosmoTool.a
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/.
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./interpolate.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./powerSpectrum.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./loadFlash.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./kdtree_leaf.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./field.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./interpolate3d.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./symbol_visible.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./bqueue.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./cic.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./yorick.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fixArray.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./kdtree_splitters.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./mykdtree.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/healpix.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/euclidian.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/fft
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/fft/fftw_calls_mpi.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/fft/fftw_calls.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/fft/fftw_complex.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/base_types.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/healpix_spectrum.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/euclidian_transform.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/euclidian_maps.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/euclidian_spectrum_1d_bin.hpp
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-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/healpix_map.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/healpix_utility.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/healpix_alms.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./miniargs.hpp
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[ 58%] Building CXX object libLSS/CMakeFiles/LSS.dir/physics/general_model_io.cpp.o
[ 58%] Building CXX object libLSS/CMakeFiles/LSS.dir/physics/tiled_array.cpp.o
[ 58%] Building CXX object libLSS/CMakeFiles/LSS.dir/physics/bias/biases.cpp.o
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[ 58%] Building CXX object libLSS/CMakeFiles/LSS.dir/physics/forwards/borg_lpt.cpp.o
[ 58%] Building CXX object libLSS/CMakeFiles/LSS.dir/physics/forwards/borg_lpt_neutrino.cpp.o
[ 61%] Building CXX object libLSS/CMakeFiles/LSS.dir/physics/forwards/borg_qlpt.cpp.o
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[ 61%] Building CXX object libLSS/CMakeFiles/LSS.dir/physics/forwards/borg_multi_pm.cpp.o
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:30,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/libLSS/samplers/lya/hades_lya_likelihood.cpp:15:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:30,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/libLSS/samplers/lya_rsd_qlpt/hades_lya_likelihood_rsd.cpp:15:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/shared_ptr.hpp:17,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/format/alt_sstream.hpp:22,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/format/internals.hpp:24,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/format.hpp:38,
                 from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/libLSS/samplers/lensing/base_likelihood_lensing.cpp:12:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object libLSS/CMakeFiles/LSS.dir/physics/forwards/borg_multi_pm_tile.cpp.o
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[ 79%] Building CXX object libLSS/CMakeFiles/LSS.dir/samplers/lensing/base_likelihood_lensing.cpp.o
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[ 79%] Building CXX object libLSS/CMakeFiles/LSS.dir/hmclet/hmclet.cpp.o
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[ 84%] Building C object libLSS/CMakeFiles/LSS.dir/__/_deps/r3d-src/r3d.c.o
[ 84%] Linking CXX static library libLSS.a
[ 84%] Built target LSS
[ 84%] Generating pyborg_doc/borg_base.hpp
[ 84%] Generating pyborg_doc/aquila_borg.cosmo.hpp
[ 87%] Generating pyborg_doc/aquila_borg.domains.hpp
[ 87%] Generating pyborg_doc/aquila_borg.forward.BORGForwardModel.hpp
[ 87%] Generating pyborg_doc/aquila_borg.forward.BaseForwardModel.hpp
[ 87%] Generating pyborg_doc/aquila_borg.forward.BaseForwardModel_v3.hpp
[ 87%] Generating pyborg_doc/aquila_borg.forward.BoxModel.hpp
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[ 87%] Generating pyborg_doc/aquila_borg.forward.hpp
[ 89%] Generating pyborg_doc/aquila_borg.forward.models.hpp
[ 89%] Generating pyborg_doc/aquila_borg.forward.velocity.VelocityBase.hpp
[ 89%] Generating pyborg_doc/aquila_borg.forward.velocity.hpp
[ 89%] Generating pyborg_doc/aquila_borg.likelihood.hpp
[ 89%] Generating pyborg_doc/aquila_borg.modelio.hpp
[ 92%] Generating pyborg_doc/aquila_borg.samplers.hpp
[ 92%] Generating pyborg_doc/borg_base.Console.hpp
[ 92%] Building CXX object python/CMakeFiles/python_borg.dir/base.cpp.o
[ 92%] Building CXX object python/CMakeFiles/python_borg.dir/pycosmo.cpp.o
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-- Install configuration: "Release"
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so
-- Installing: $PREFIX/lib/python3.7/site-packages/borg
-- Installing: $PREFIX/lib/python3.7/site-packages/borg/__init__.py
-- Up-to-date: $PREFIX/lib/python3.7/site-packages/aquila_borg
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/dask_support
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/dask_support/__init__.py
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/adaptors
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/adaptors/astropy.py
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/borg_native.py
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/dft.py
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/__init__.py
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/utils.py
-- Installing: $PREFIX/lib/python3.7/site-packages/aquila_borg/dask.py
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-- Install configuration: "Release"
-- Up-to-date: $PREFIX/share/aquila_borg//class
-- Up-to-date: $PREFIX/share/aquila_borg//class/bbn
-- Up-to-date: $PREFIX/share/aquila_borg//class/bbn/sBBN_2017.dat
-- Up-to-date: $PREFIX/share/aquila_borg//class/bbn/sBBN.dat
-- Up-to-date: $PREFIX/share/aquila_borg//class/bbn/sBBN_2017_marcucci.dat
-- Up-to-date: $PREFIX/share/aquila_borg//class/hyrec
-- Up-to-date: $PREFIX/share/aquila_borg//class/hyrec/output_xe.dat
-- Up-to-date: $PREFIX/share/aquila_borg//class/hyrec/input.dat
-- Up-to-date: $PREFIX/share/aquila_borg//class/hyrec/two_photon_tables.dat
-- Up-to-date: $PREFIX/share/aquila_borg//class/hyrec/two_photon_tables_hires.dat
-- Up-to-date: $PREFIX/share/aquila_borg//class/hyrec/Alpha_inf.dat
-- Up-to-date: $PREFIX/share/aquila_borg//class/hyrec/R_inf.dat
-- Up-to-date: $PREFIX/share/aquila_borg//class/hyrec/fit_swift.dat
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[ 23%] Built target data-install
[ 26%] Built target cosmotool
[ 26%] Building CXX object tools/hades/CMakeFiles/hades.dir/likelihood_info.cpp.o
[ 78%] Built target LSS
[ 80%] Building CXX object tools/borg_help/CMakeFiles/borg_help.dir/borg_help.cpp.o
[ 80%] Linking CXX static library libhades.a
[ 80%] Built target hades
[ 83%] Building CXX object tools/ares/CMakeFiles/ares3.dir/ares3.cpp.o
[ 83%] Linking CXX executable borg_help
[ 83%] Built target borg_help
[ 85%] Building CXX object tools/hades/CMakeFiles/hades3.dir/hades3.cpp.o
[ 85%] Linking CXX executable ares3
[ 85%] Built target ares3
[ 85%] Building CXX object tools/hades/CMakeFiles/hades3.dir/hades_bundle_init.cpp.o
[100%] Built target python_borg
[100%] Building CXX object tools/borg2gadget3/CMakeFiles/borg2gadget3.dir/borg2gadget3.cpp.o
[100%] Linking CXX executable borg2gadget3
[100%] Built target borg2gadget3
[100%] Building CXX object tools/borg_forward/CMakeFiles/borg_forward.dir/borg_forward.cpp.o
[100%] Linking CXX executable hades3
[100%] Built target hades3
[100%] Building CXX object tools/borg_forward/CMakeFiles/borg_forward.dir/bias_generator.cpp.o
[100%] Building CXX object tools/hades_python/CMakeFiles/hades_python.dir/hades_python.cpp.o
[100%] Linking CXX executable borg_forward
[100%] Built target borg_forward
[100%] Building CXX object tools/hades_python/CMakeFiles/hades_python.dir/python_bundle_init.cpp.o
[100%] Building CXX object tools/hades_python/CMakeFiles/hades_python.dir/python_mock_gen.cpp.o
[100%] Linking CXX executable hades_python
[100%] Built target hades_python
-- Install configuration: "Release"
-- Installing: $PREFIX/bin/ares3
-- Installing: $PREFIX/bin/hades3
-- Installing: $PREFIX/bin/hades_python
-- Installing: $PREFIX/bin/borg2gadget3
-- Installing: $PREFIX/bin/borg_forward
-- Installing: $PREFIX/bin/borg_help
[100%] Built target tools-install

Resource usage statistics from building aquila_borg:
   Process count: 31
   CPU time: Sys=0:01:36.5, User=0:30:32.8
   Memory: 3.9G
   Disk usage: 1.1M
   Time elapsed: 0:40:04.8


Packaging aquila_borg
INFO:conda_build.build:Packaging aquila_borg
/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/environ.py:444: UserWarning: The environment variable 'BORG_MPI' is being passed through with value 'nompi'.  If you are splitting build and test phases with --no-test, please ensure that this value is also set similarly at test time.
  warnings.warn(
/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/environ.py:444: UserWarning: The environment variable 'BORG_PREDOWNLOAD' is being passed through with value '/build/jenkins/borg_downloads'.  If you are splitting build and test phases with --no-test, please ensure that this value is also set similarly at test time.
  warnings.warn(
Packaging aquila_borg-2.99.475-nompi_py37h970b880_100
INFO:conda_build.build:Packaging aquila_borg-2.99.475-nompi_py37h970b880_100
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compiling .pyc files...
number of files: 33
Warning: rpath /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib is outside prefix /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla (removing it)
Warning: rpath /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib is outside prefix /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla (removing it)
Warning: rpath /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib is outside prefix /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla (removing it)
Warning: rpath /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib is outside prefix /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla (removing it)
Warning: rpath /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib is outside prefix /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla (removing it)
Warning: rpath /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib is outside prefix /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla (removing it)
Warning: rpath /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib is outside prefix /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla (removing it)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libpython3.7m.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libboost_test_exec_monitor.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libboost_exception.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libtkstub8.6.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libpython3.7m.nolto.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libz.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libncurses++w.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libffi.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libtclstub8.6.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libncurses++.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libbz2.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libgslcblas.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libkeyutils.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libgsl.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/tdbc1.1.3/libtdbcstub1.1.3.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/python3.7/site-packages/numpy/core/lib/libnpymath.a)
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Binary doesn't have a program header
Binary doesn't have a program header
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Binary doesn't have a program header
Binary doesn't have a program header
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Binary doesn't have a program header
Binary doesn't have a program header
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/python3.7/site-packages/numpy/random/lib/libnpyrandom.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/itcl4.2.2/libitclstub4.2.2.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libexpat.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libltdl.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libuv.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libgettextpo.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libcharset.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libctf.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libopcodes.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libiconv.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libpopt.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libctf-nobfd.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libbfd.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libunistring.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libxxhash.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libtextstyle.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/libasprintf.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/gcc/x86_64-conda-linux-gnu/12.2.0/libsupc++.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/gcc/x86_64-conda-linux-gnu/12.2.0/libgcc_eh.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/gcc/x86_64-conda-linux-gnu/12.2.0/libstdc++.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/gcc/x86_64-conda-linux-gnu/12.2.0/libgcov.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/gcc/x86_64-conda-linux-gnu/12.2.0/libstdc++fs.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/gcc/x86_64-conda-linux-gnu/12.2.0/libgcc.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/lib/gcc/x86_64-conda-linux-gnu/12.2.0/libiberty.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libutil.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libpthread_nonshared.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libBrokenLocale.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libpthread.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libbsd.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/librpcsvc.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libm.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libdl.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libresolv.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libc.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libc_nonshared.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libanl.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/libcrypt.a)
WARNING :: Failed to get_static_lib_exports(/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/lib64/librt.a)
   INFO: sysroot: '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/' files: '['/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/share/zoneinfo/zone.tab', '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/share/zoneinfo/tzdata.zi', '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/share/zoneinfo/right/Zulu', '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env/x86_64-conda-linux-gnu/sysroot/usr/share/zoneinfo/right/WET']'
   INFO (aquila_borg,bin/borg_forward): Needed DSO lib/libboost_program_options.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/borg_forward): Needed DSO lib/libhdf5_cpp.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/borg_forward): Needed DSO lib/libhdf5.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/borg_forward): Needed DSO lib/libgsl.so.25 found in conda-forge::gsl-2.7-he838d99_0
WARNING (aquila_borg,bin/borg_forward): Needed DSO lib/libopenblas.so.0 found in ['libopenblas']
WARNING (aquila_borg,bin/borg_forward): .. but ['libopenblas'] not in reqs/run, (i.e. it is overlinking) (likely) or a missing dependency (less likely)
   INFO (aquila_borg,bin/borg_forward): Needed DSO lib/libz.so.1 found in conda-forge::libzlib-1.2.13-h166bdaf_4
   INFO (aquila_borg,bin/borg_forward): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libdl.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg_forward): Needed DSO lib/libboost_chrono.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/borg_forward): Needed DSO lib/libstdc++.so.6 found in conda-forge::libstdcxx-ng-12.2.0-h46fd767_19
   INFO (aquila_borg,bin/borg_forward): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libm.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg_forward): Needed DSO lib/libgomp.so.1 found in conda-forge::_openmp_mutex-4.5-2_gnu
   INFO (aquila_borg,bin/borg_forward): Needed DSO lib/libgcc_s.so.1 found in conda-forge::libgcc-ng-12.2.0-h65d4601_19
   INFO (aquila_borg,bin/borg_forward): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libpthread.so.0 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg_forward): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libc.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg_forward): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/ld-linux-x86-64.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO lib/libboost_program_options.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO lib/libhdf5_cpp.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO lib/libhdf5.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libdl.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO lib/libboost_chrono.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO lib/libstdc++.so.6 found in conda-forge::libstdcxx-ng-12.2.0-h46fd767_19
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libm.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO lib/libgomp.so.1 found in conda-forge::_openmp_mutex-4.5-2_gnu
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO lib/libgcc_s.so.1 found in conda-forge::libgcc-ng-12.2.0-h65d4601_19
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libpthread.so.0 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libc.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg2gadget3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/ld-linux-x86-64.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO lib/libhdf5_cpp.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO lib/libhdf5.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO lib/libgsl.so.25 found in conda-forge::gsl-2.7-he838d99_0
WARNING (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO lib/libopenblas.so.0 found in ['libopenblas']
WARNING (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): .. but ['libopenblas'] not in reqs/run, (i.e. it is overlinking) (likely) or a missing dependency (less likely)
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libdl.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO lib/libboost_chrono.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO lib/libstdc++.so.6 found in conda-forge::libstdcxx-ng-12.2.0-h46fd767_19
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libm.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO lib/libgomp.so.1 found in conda-forge::_openmp_mutex-4.5-2_gnu
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO lib/libgcc_s.so.1 found in conda-forge::libgcc-ng-12.2.0-h65d4601_19
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libpthread.so.0 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libc.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/ld-linux-x86-64.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libboost_random.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libhdf5_cpp.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libhdf5.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libgsl.so.25 found in conda-forge::gsl-2.7-he838d99_0
WARNING (aquila_borg,bin/hades_python): Needed DSO lib/libopenblas.so.0 found in ['libopenblas']
WARNING (aquila_borg,bin/hades_python): .. but ['libopenblas'] not in reqs/run, (i.e. it is overlinking) (likely) or a missing dependency (less likely)
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libz.so.1 found in conda-forge::libzlib-1.2.13-h166bdaf_4
   INFO (aquila_borg,bin/hades_python): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libdl.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libboost_chrono.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libpython3.7m.so.1.0 found in conda-forge::python-3.7.12-hf930737_100_cpython
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libstdc++.so.6 found in conda-forge::libstdcxx-ng-12.2.0-h46fd767_19
   INFO (aquila_borg,bin/hades_python): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libm.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libgomp.so.1 found in conda-forge::_openmp_mutex-4.5-2_gnu
   INFO (aquila_borg,bin/hades_python): Needed DSO lib/libgcc_s.so.1 found in conda-forge::libgcc-ng-12.2.0-h65d4601_19
Importing conda-verify failed.  Please be sure to test your packages.  conda install conda-verify to make this message go away.
WARNING:conda_build.build:Importing conda-verify failed.  Please be sure to test your packages.  conda install conda-verify to make this message go away.
   INFO (aquila_borg,bin/hades_python): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libpthread.so.0 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades_python): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libc.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades_python): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/ld-linux-x86-64.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades3): Needed DSO lib/libboost_random.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/hades3): Needed DSO lib/libhdf5_cpp.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/hades3): Needed DSO lib/libhdf5.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/hades3): Needed DSO lib/libgsl.so.25 found in conda-forge::gsl-2.7-he838d99_0
WARNING (aquila_borg,bin/hades3): Needed DSO lib/libopenblas.so.0 found in ['libopenblas']
WARNING (aquila_borg,bin/hades3): .. but ['libopenblas'] not in reqs/run, (i.e. it is overlinking) (likely) or a missing dependency (less likely)
   INFO (aquila_borg,bin/hades3): Needed DSO lib/libz.so.1 found in conda-forge::libzlib-1.2.13-h166bdaf_4
   INFO (aquila_borg,bin/hades3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libdl.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades3): Needed DSO lib/libboost_chrono.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/hades3): Needed DSO lib/libstdc++.so.6 found in conda-forge::libstdcxx-ng-12.2.0-h46fd767_19
   INFO (aquila_borg,bin/hades3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libm.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades3): Needed DSO lib/libgomp.so.1 found in conda-forge::_openmp_mutex-4.5-2_gnu
   INFO (aquila_borg,bin/hades3): Needed DSO lib/libgcc_s.so.1 found in conda-forge::libgcc-ng-12.2.0-h65d4601_19
   INFO (aquila_borg,bin/hades3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libpthread.so.0 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libc.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/hades3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/ld-linux-x86-64.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/ares3): Needed DSO lib/libboost_random.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/ares3): Needed DSO lib/libhdf5_cpp.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/ares3): Needed DSO lib/libhdf5.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/ares3): Needed DSO lib/libgsl.so.25 found in conda-forge::gsl-2.7-he838d99_0
WARNING (aquila_borg,bin/ares3): Needed DSO lib/libopenblas.so.0 found in ['libopenblas']
WARNING (aquila_borg,bin/ares3): .. but ['libopenblas'] not in reqs/run, (i.e. it is overlinking) (likely) or a missing dependency (less likely)
   INFO (aquila_borg,bin/ares3): Needed DSO lib/libz.so.1 found in conda-forge::libzlib-1.2.13-h166bdaf_4
   INFO (aquila_borg,bin/ares3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libdl.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/ares3): Needed DSO lib/libboost_chrono.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/ares3): Needed DSO lib/libstdc++.so.6 found in conda-forge::libstdcxx-ng-12.2.0-h46fd767_19
   INFO (aquila_borg,bin/ares3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libm.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/ares3): Needed DSO lib/libgomp.so.1 found in conda-forge::_openmp_mutex-4.5-2_gnu
   INFO (aquila_borg,bin/ares3): Needed DSO lib/libgcc_s.so.1 found in conda-forge::libgcc-ng-12.2.0-h65d4601_19
   INFO (aquila_borg,bin/ares3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libpthread.so.0 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/ares3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libc.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/ares3): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/ld-linux-x86-64.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg_help): Needed DSO lib/libboost_program_options.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/borg_help): Needed DSO lib/libhdf5_cpp.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/borg_help): Needed DSO lib/libhdf5.so.200 found in conda-forge::hdf5-1.12.2-nompi_h4df4325_101
   INFO (aquila_borg,bin/borg_help): Needed DSO lib/libgsl.so.25 found in conda-forge::gsl-2.7-he838d99_0
WARNING (aquila_borg,bin/borg_help): Needed DSO lib/libopenblas.so.0 found in ['libopenblas']
WARNING (aquila_borg,bin/borg_help): .. but ['libopenblas'] not in reqs/run, (i.e. it is overlinking) (likely) or a missing dependency (less likely)
   INFO (aquila_borg,bin/borg_help): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libdl.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg_help): Needed DSO lib/libboost_chrono.so.1.77.0 found in conda-forge::boost-cpp-1.77.0-he72f1d9_2
   INFO (aquila_borg,bin/borg_help): Needed DSO lib/libstdc++.so.6 found in conda-forge::libstdcxx-ng-12.2.0-h46fd767_19
   INFO (aquila_borg,bin/borg_help): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libm.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg_help): Needed DSO lib/libgomp.so.1 found in conda-forge::_openmp_mutex-4.5-2_gnu
   INFO (aquila_borg,bin/borg_help): Needed DSO lib/libgcc_s.so.1 found in conda-forge::libgcc-ng-12.2.0-h65d4601_19
   INFO (aquila_borg,bin/borg_help): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libpthread.so.0 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg_help): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/libc.so.6 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
   INFO (aquila_borg,bin/borg_help): Needed DSO x86_64-conda-linux-gnu/sysroot/lib64/ld-linux-x86-64.so.2 found in CDT/compiler package conda-forge::sysroot_linux-64-2.12-he073ed8_15
WARNING (aquila_borg): run-exports library package conda-forge::numpy-1.21.6-py37h976b520_0 in requirements/run but it is not used (i.e. it is overdepending or perhaps statically linked? If that is what you want then add it to `build/ignore_run_exports`)
WARNING (aquila_borg): plugin library (Python) package conda-forge::pyfftw-0.13.0-py37h28580d9_2 in requirements/run but it is not used (i.e. it is overdepending or perhaps statically linked? If that is what you want then add it to `build/ignore_run_exports`)
WARNING (aquila_borg): plugin library (Python) package conda-forge::cffi-1.15.1-py37h43b0acd_1 in requirements/run but it is not used (i.e. it is overdepending or perhaps statically linked? If that is what you want then add it to `build/ignore_run_exports`)
Fixing permissions
INFO :: Time taken to mark (prefix)
        0 replacements in 0 files was 0.19 seconds
Files containing CONDA_PREFIX
-----------------------------
bin/ares3 (binary): Patching
bin/borg2gadget3 (binary): Patching
bin/borg_forward (binary): Patching
bin/borg_help (binary): Patching
bin/hades3 (binary): Patching
bin/hades_python (binary): Patching
lib/python3.7/site-packages/aquila_borg/_borg.cpython-37m-x86_64-linux-gnu.so (binary): Patching
TEST START: /build/jenkins/miniconda3/envs/builder/conda-bld/linux-64/aquila_borg-2.99.475-nompi_py37h970b880_100.tar.bz2
Renaming work directory '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work' to '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work_moved_aquila_borg-2.99.475-nompi_py37h970b880_100_linux-64'
INFO:conda_build.utils:Renaming work directory '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work' to '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work_moved_aquila_borg-2.99.475-nompi_py37h970b880_100_linux-64'
shutil.move(work)=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work, dest=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work_moved_aquila_borg-2.99.475-nompi_py37h970b880_100_linux-64)
INFO:conda_build.utils:shutil.move(work)=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work, dest=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work_moved_aquila_borg-2.99.475-nompi_py37h970b880_100_linux-64)
/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/environ.py:444: UserWarning: The environment variable 'BORG_MPI' is being passed through with value 'nompi'.  If you are splitting build and test phases with --no-test, please ensure that this value is also set similarly at test time.
  warnings.warn(
/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/environ.py:444: UserWarning: The environment variable 'BORG_PREDOWNLOAD' is being passed through with value '/build/jenkins/borg_downloads'.  If you are splitting build and test phases with --no-test, please ensure that this value is also set similarly at test time.
  warnings.warn(
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol


The following NEW packages will be INSTALLED:

    _libgcc_mutex:      0.1-conda_forge                 conda-forge
    _openmp_mutex:      4.5-2_gnu                       conda-forge
    aquila_borg:        2.99.475-nompi_py37h970b880_100 local      
    astropy:            4.3.1-py37hb1e94ed_2            conda-forge
    attrs:              22.2.0-pyh71513ae_0             conda-forge
    boost-cpp:          1.77.0-he72f1d9_2               conda-forge
    brotli:             1.0.9-h166bdaf_8                conda-forge
    brotli-bin:         1.0.9-h166bdaf_8                conda-forge
    bzip2:              1.0.8-h7f98852_4                conda-forge
    c-ares:             1.18.1-h7f98852_0               conda-forge
    ca-certificates:    2022.12.7-ha878542_0            conda-forge
    cached-property:    1.5.2-hd8ed1ab_1                conda-forge
    cached_property:    1.5.2-pyha770c72_1              conda-forge
    certifi:            2022.12.7-pyhd8ed1ab_0          conda-forge
    cffi:               1.15.1-py37h43b0acd_1           conda-forge
    cfitsio:            4.1.0-hd9d235c_0                conda-forge
    cycler:             0.11.0-pyhd8ed1ab_0             conda-forge
    deprecated:         1.2.13-pyh6c4a22f_0             conda-forge
    exceptiongroup:     1.1.0-pyhd8ed1ab_0              conda-forge
    fftw:               3.3.10-nompi_hf0379b8_106       conda-forge
    fonttools:          4.38.0-py37h540881e_0           conda-forge
    freetype:           2.12.1-hca18f0e_1               conda-forge
    gsl:                2.7-he838d99_0                  conda-forge
    h5py:               3.7.0-nompi_py37hf1ce037_101    conda-forge
    hdf5:               1.12.2-nompi_h4df4325_101       conda-forge
    healpy:             1.16.1-py37hc950561_0           conda-forge
    icu:                70.1-h27087fc_0                 conda-forge
    importlib-metadata: 4.11.4-py37h89c1867_0           conda-forge
    importlib_metadata: 4.11.4-hd8ed1ab_0               conda-forge
    iniconfig:          2.0.0-pyhd8ed1ab_0              conda-forge
    jpeg:               9e-h166bdaf_2                   conda-forge
    keyutils:           1.6.1-h166bdaf_0                conda-forge
    kiwisolver:         1.4.4-py37h7cecad7_0            conda-forge
    krb5:               1.20.1-h81ceb04_0               conda-forge
    lcms2:              2.14-h6ed2654_0                 conda-forge
    ld_impl_linux-64:   2.39-hcc3a1bd_1                 conda-forge
    lerc:               4.0.0-h27087fc_0                conda-forge
    libaec:             1.0.6-hcb278e6_1                conda-forge
    libblas:            3.9.0-16_linux64_openblas       conda-forge
    libbrotlicommon:    1.0.9-h166bdaf_8                conda-forge
    libbrotlidec:       1.0.9-h166bdaf_8                conda-forge
    libbrotlienc:       1.0.9-h166bdaf_8                conda-forge
    libcblas:           3.9.0-16_linux64_openblas       conda-forge
    libcurl:            7.87.0-hdc1c0ab_0               conda-forge
    libdeflate:         1.14-h166bdaf_0                 conda-forge
    libedit:            3.1.20191231-he28a2e2_2         conda-forge
    libev:              4.33-h516909a_1                 conda-forge
    libffi:             3.4.2-h7f98852_5                conda-forge
    libgcc-ng:          12.2.0-h65d4601_19              conda-forge
    libgfortran-ng:     12.2.0-h69a702a_19              conda-forge
    libgfortran5:       12.2.0-h337968e_19              conda-forge
    libgomp:            12.2.0-h65d4601_19              conda-forge
    liblapack:          3.9.0-16_linux64_openblas       conda-forge
    libnghttp2:         1.51.0-hff17c54_0               conda-forge
    libnsl:             2.0.0-h7f98852_0                conda-forge
    libopenblas:        0.3.21-pthreads_h78a6416_3      conda-forge
    libpng:             1.6.39-h753d276_0               conda-forge
    libsqlite:          3.40.0-h753d276_0               conda-forge
    libssh2:            1.10.0-hf14f497_3               conda-forge
    libstdcxx-ng:       12.2.0-h46fd767_19              conda-forge
    libtiff:            4.4.0-h82bc61c_5                conda-forge
    libwebp-base:       1.2.4-h166bdaf_0                conda-forge
    libxcb:             1.13-h7f98852_1004              conda-forge
    libzlib:            1.2.13-h166bdaf_4               conda-forge
    llvm-openmp:        15.0.7-h0cdce71_0               conda-forge
    matplotlib-base:    3.5.3-py37hf395dca_2            conda-forge
    munkres:            1.1.4-pyh9f0ad1d_0              conda-forge
    ncurses:            6.3-h27087fc_1                  conda-forge
    numpy:              1.21.6-py37h976b520_0           conda-forge
    openjpeg:           2.5.0-h7d73246_1                conda-forge
    openssl:            3.0.7-h0b41bf4_1                conda-forge
    packaging:          23.0-pyhd8ed1ab_0               conda-forge
    pillow:             9.2.0-py37h850a105_2            conda-forge
    pip:                22.3.1-pyhd8ed1ab_0             conda-forge
    pluggy:             1.0.0-py37h89c1867_3            conda-forge
    pthread-stubs:      0.4-h36c2ea0_1001               conda-forge
    pycparser:          2.21-pyhd8ed1ab_0               conda-forge
    pyerfa:             2.0.0.1-py37hda87dfa_2          conda-forge
    pyfftw:             0.13.0-py37h28580d9_2           conda-forge
    pyparsing:          3.0.9-pyhd8ed1ab_0              conda-forge
    pytest:             7.2.0-py37h89c1867_0            conda-forge
    pytest-runner:      6.0.0-pyhd8ed1ab_0              conda-forge
    python:             3.7.12-hf930737_100_cpython     conda-forge
    python-dateutil:    2.8.2-pyhd8ed1ab_0              conda-forge
    python_abi:         3.7-3_cp37m                     conda-forge
    readline:           8.1.2-h0f457ee_0                conda-forge
    scipy:              1.7.3-py37hf2a6cf1_0            conda-forge
    setuptools:         66.1.1-pyhd8ed1ab_0             conda-forge
    six:                1.16.0-pyh6c4a22f_0             conda-forge
    sqlite:             3.40.0-h4ff8645_0               conda-forge
    tk:                 8.6.12-h27826a3_0               conda-forge
    tomli:              2.0.1-pyhd8ed1ab_0              conda-forge
    typing-extensions:  4.4.0-hd8ed1ab_0                conda-forge
    typing_extensions:  4.4.0-pyha770c72_0              conda-forge
    unicodedata2:       14.0.0-py37h540881e_1           conda-forge
    wheel:              0.38.4-pyhd8ed1ab_0             conda-forge
    wrapt:              1.14.1-py37h540881e_0           conda-forge
    xorg-libxau:        1.0.9-h7f98852_0                conda-forge
    xorg-libxdmcp:      1.1.3-h7f98852_0                conda-forge
    xz:                 5.2.6-h166bdaf_0                conda-forge
    zipp:               3.11.0-pyhd8ed1ab_0             conda-forge
    zstd:               1.5.2-h3eb15da_6                conda-forge

Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
export PREFIX=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol
export SRC_DIR=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/test_tmp
Initializing console.
import: 'aquila_borg'
[0/0][INFO   ] libLSS version 75bad6f737058888453ebd98f15a89005a4ab559 built-in modules 
[0/0][INFO S ] Registered forward models:
[0/0][INFO S ]    2LPT_CIC, 2LPT_CIC_OPENMP, 2LPT_DOUBLE, 2LPT_NGP, ALTAIR_AP, Downgrade
[0/0][INFO S ]    EnforceMass, HADES_LOG, HADES_PT, Haar, LPT_CIC, LPT_CIC_OPENMP, LPT_DOUBLE
[0/0][INFO S ]    LPT_NGP, LPT_NU_CIC, LPT_NU_CIC_OPENMP, PATCH_MODEL, PM_CIC, PM_CIC_OPENMP
[0/0][INFO S ]    PM_CIC_OPENMP2, PM_TILE_CIC, PRIMORDIAL, PRIMORDIALV2, PRIMORDIAL_AS
[0/0][INFO S ]    PRIMORDIAL_FNL, QLPT, QLPT_RSD, Softplus, TRANSFER_CLASS, TRANSFER_EHU
[0/0][INFO S ]    TRANSFER_EHUV2, Transfer, Upgrade, bias::BrokenPowerLaw, bias::BrokenPowerLawSigmoid
[0/0][INFO S ]    bias::DoubleBrokenPowerLaw, bias::EFT, bias::EFT_Thresh, bias::Linear
[0/0][INFO S ]    bias::ManyPower_1^1, bias::ManyPower_1^2, bias::ManyPower_1^4, bias::ManyPower_2^2
[0/0][INFO S ]    bias::Noop, bias::PowerLaw
[0/0][INFO S ] Registered forward models (v3):
[0/0][INFO S ]    KappaSphere
[0/0][INFO S ] Registered likelihoods:
[0/0][INFO S ]    BORG_NULL, BORG_POISSON, BORG_REDUCED_SHEAR, BORG_SHEAR, BORG_STUDENT_T
[0/0][INFO S ]    EFT_BIAS_LIKE, EFT_BIAS_MARG_LIKE, GAUSSIAN_BROKEN_POWER_LAW_BIAS, GAUSSIAN_LINEAR_BIAS
[0/0][INFO S ]    GAUSSIAN_MO_WHITE_BIAS, GAUSSIAN_POWER_LAW_BIAS, GENERIC_GAUSSIAN_MANY_POWER_1^1
[0/0][INFO S ]    GENERIC_GAUSSIAN_MANY_POWER_1^2, GENERIC_POISSON_BROKEN_POWERLAW_BIAS
[0/0][INFO S ]    GENERIC_POISSON_BROKEN_POWERLAW_SIGMOID_BIAS, GENERIC_POISSON_MANY_POWER_1^1
[0/0][INFO S ]    GENERIC_POISSON_MANY_POWER_1^2, GENERIC_POISSON_MANY_POWER_1^2_DEGRADE4
[0/0][INFO S ]    GENERIC_POISSON_MANY_POWER_2^2, GENERIC_POISSON_MANY_POWER_2^2_DEGRADE4
[0/0][INFO S ]    GENERIC_POISSON_MO_WHITE_BIAS, GENERIC_POISSON_POWERLAW_BIAS, GENERIC_POISSON_POWERLAW_BIAS_DEGRADE4
[0/0][INFO S ]    HADES_LINEAR, NOOP_POISSON, OCT_LIKELIHOOD, OCT_LIKELIHOOD_MARG, POISSON
[0/0][INFO S ]    ROBUST_POISSON_BROKEN_POWERLAW_BIAS, ROBUST_POISSON_BROKEN_POWERLAW_SIGMOID_BIAS
[0/0][INFO S ]    ROBUST_POISSON_MANY_POWER_1^1, ROBUST_POISSON_MANY_POWER_1^2, ROBUST_POISSON_POWERLAW_BIAS
[0/0][INFO   ] Registering data IO converters
[0/0][INFO S ] ARES3 base version 75bad6f737058888453ebd98f15a89005a4ab559
[0/0][INFO S ] GIT report
[0/0][INFO S ] - Module: root, Version: 75bad6f737058888453ebd98f15a89005a4ab559
[0/0][INFO S ] 
[0/0][INFO S ] 
[0/0][INFO   ] CPU features: MMX [!AVX] [!AVX2] [!AVX512F] SSE SSE2 SSE3 [!SSE4.1] [!SSE4.2] [!AES] [!BMI] [!BMI2] 
import: 'aquila_borg'

Resource usage statistics from testing aquila_borg:
   Process count: 1
   CPU time: Sys=0:00:00.0, User=-
   Memory: 3.2M
   Disk usage: 32B
   Time elapsed: 0:00:02.3


TEST END: /build/jenkins/miniconda3/envs/builder/conda-bld/linux-64/aquila_borg-2.99.475-nompi_py37h970b880_100.tar.bz2
Renaming work directory '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work' to '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work_moved_aquila_borg-2.99.475-nompi_py37h970b880_100_linux-64_main_build_loop'
INFO:conda_build.utils:Renaming work directory '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work' to '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work_moved_aquila_borg-2.99.475-nompi_py37h970b880_100_linux-64_main_build_loop'
shutil.move(work)=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work, dest=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work_moved_aquila_borg-2.99.475-nompi_py37h970b880_100_linux-64_main_build_loop)
INFO:conda_build.utils:shutil.move(work)=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work, dest=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work_moved_aquila_borg-2.99.475-nompi_py37h970b880_100_linux-64_main_build_loop)
/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/environ.py:444: UserWarning: The environment variable 'BORG_MPI' is being passed through with value 'nompi'.  If you are splitting build and test phases with --no-test, please ensure that this value is also set similarly at test time.
  warnings.warn(
/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/environ.py:444: UserWarning: The environment variable 'BORG_PREDOWNLOAD' is being passed through with value '/build/jenkins/borg_downloads'.  If you are splitting build and test phases with --no-test, please ensure that this value is also set similarly at test time.
  warnings.warn(
From bitbucket.org:aquila-consortium/borg
   75bad6f7..b2091035  release/3.1 -> release/3.1
Cloning into '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work'...
done.
Switched to a new branch 'release/3.1'
Branch 'release/3.1' set up to track remote branch 'release/3.1' from 'origin'.
Submodule 'external/cosmotool' (https://bitbucket.org/glavaux/cosmotool.git) registered for path 'external/cosmotool'
Cloning into '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/external/cosmotool'...
Submodule path 'external/cosmotool': checked out '046e9a1447ba1fed957d1fe1e8b95c68adcca9a9'
commit b2091035e726636a709387061a72b4dc42af57a2
Author: Guilhem Lavaux <guilhem.lavaux@iap.fr>
Date:   Sun Jan 22 15:48:50 2023 +0100

    Fix target name

v2.99-476-gb2091035

On branch release/3.1
Your branch is up to date with 'origin/release/3.1'.

nothing to commit, working tree clean

checkout: 'release/3.1'
==> /usr/bin/git log -n1 <==

==> /usr/bin/git describe --tags --dirty <==

==> /usr/bin/git status <==

Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
BUILD START: ['aquila_borg-2.99.476-nompi_py310h970b880_100.tar.bz2']
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla


The following NEW packages will be INSTALLED:

    _libgcc_mutex:    0.1-conda_forge            conda-forge
    _openmp_mutex:    4.5-2_gnu                  conda-forge
    boost-cpp:        1.77.0-he72f1d9_2          conda-forge
    bzip2:            1.0.8-h7f98852_4           conda-forge
    c-ares:           1.18.1-h7f98852_0          conda-forge
    ca-certificates:  2022.12.7-ha878542_0       conda-forge
    cffi:             1.15.1-py310h255011f_3     conda-forge
    cython:           0.29.33-py310heca2aa9_0    conda-forge
    gsl:              2.7-he838d99_0             conda-forge
    hdf5:             1.12.2-nompi_h4df4325_101  conda-forge
    icu:              70.1-h27087fc_0            conda-forge
    keyutils:         1.6.1-h166bdaf_0           conda-forge
    krb5:             1.20.1-h81ceb04_0          conda-forge
    ld_impl_linux-64: 2.39-hcc3a1bd_1            conda-forge
    libaec:           1.0.6-hcb278e6_1           conda-forge
    libblas:          3.9.0-16_linux64_openblas  conda-forge
    libcblas:         3.9.0-16_linux64_openblas  conda-forge
    libcurl:          7.87.0-hdc1c0ab_0          conda-forge
    libedit:          3.1.20191231-he28a2e2_2    conda-forge
    libev:            4.33-h516909a_1            conda-forge
    libffi:           3.4.2-h7f98852_5           conda-forge
    libgcc-ng:        12.2.0-h65d4601_19         conda-forge
    libgfortran-ng:   12.2.0-h69a702a_19         conda-forge
    libgfortran5:     12.2.0-h337968e_19         conda-forge
    libgomp:          12.2.0-h65d4601_19         conda-forge
    liblapack:        3.9.0-16_linux64_openblas  conda-forge
    libnghttp2:       1.51.0-hff17c54_0          conda-forge
    libnsl:           2.0.0-h7f98852_0           conda-forge
    libopenblas:      0.3.21-pthreads_h78a6416_3 conda-forge
    libsqlite:        3.40.0-h753d276_0          conda-forge
    libssh2:          1.10.0-hf14f497_3          conda-forge
    libstdcxx-ng:     12.2.0-h46fd767_19         conda-forge
    libuuid:          2.32.1-h7f98852_1000       conda-forge
    libzlib:          1.2.13-h166bdaf_4          conda-forge
    ncurses:          6.3-h27087fc_1             conda-forge
    numpy:            1.21.6-py310h45f3432_0     conda-forge
    openssl:          3.0.7-h0b41bf4_1           conda-forge
    pip:              22.3.1-pyhd8ed1ab_0        conda-forge
    pkg-config:       0.29.2-h36c2ea0_1008       conda-forge
    pkgconfig:        1.5.5-pyhd8ed1ab_4         conda-forge
    pycparser:        2.21-pyhd8ed1ab_0          conda-forge
    pyfftw:           0.13.1-py310h0a54255_0     conda-forge
    python:           3.10.8-h4a9ceb5_0_cpython  conda-forge
    python_abi:       3.10-3_cp310               conda-forge
    readline:         8.1.2-h0f457ee_0           conda-forge
    setuptools:       66.1.1-pyhd8ed1ab_0        conda-forge
    tk:               8.6.12-h27826a3_0          conda-forge
    tzdata:           2022g-h191b570_0           conda-forge
    wheel:            0.38.4-pyhd8ed1ab_0        conda-forge
    xz:               5.2.6-h166bdaf_0           conda-forge
    zlib:             1.2.13-h166bdaf_4          conda-forge
    zstd:             1.5.2-h3eb15da_6           conda-forge

Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env


The following NEW packages will be INSTALLED:

    _libgcc_mutex:            0.1-conda_forge         conda-forge
    _openmp_mutex:            4.5-2_gnu               conda-forge
    autoconf:                 2.69-pl5321hd708f79_11  conda-forge
    automake:                 1.16.5-pl5321ha770c72_0 conda-forge
    binutils_impl_linux-64:   2.39-he00db2b_1         conda-forge
    binutils_linux-64:        2.39-h5fc0e48_11        conda-forge
    bzip2:                    1.0.8-h7f98852_4        conda-forge
    c-ares:                   1.18.1-h7f98852_0       conda-forge
    ca-certificates:          2022.12.7-ha878542_0    conda-forge
    cmake:                    3.25.2-h077f3f9_0       conda-forge
    expat:                    2.5.0-h27087fc_0        conda-forge
    gcc_impl_linux-64:        12.2.0-hcc96c02_19      conda-forge
    gcc_linux-64:             12.2.0-h4798a0e_11      conda-forge
    gettext:                  0.21.1-h27087fc_0       conda-forge
    gxx_impl_linux-64:        12.2.0-hcc96c02_19      conda-forge
    gxx_linux-64:             12.2.0-hb41e900_11      conda-forge
    kernel-headers_linux-64:  2.6.32-he073ed8_15      conda-forge
    keyutils:                 1.6.1-h166bdaf_0        conda-forge
    krb5:                     1.20.1-h81ceb04_0       conda-forge
    ld_impl_linux-64:         2.39-hcc3a1bd_1         conda-forge
    libcurl:                  7.87.0-hdc1c0ab_0       conda-forge
    libedit:                  3.1.20191231-he28a2e2_2 conda-forge
    libev:                    4.33-h516909a_1         conda-forge
    libgcc-devel_linux-64:    12.2.0-h3b97bd3_19      conda-forge
    libgcc-ng:                12.2.0-h65d4601_19      conda-forge
    libgomp:                  12.2.0-h65d4601_19      conda-forge
    libiconv:                 1.17-h166bdaf_0         conda-forge
    libidn2:                  2.3.4-h166bdaf_0        conda-forge
    libnghttp2:               1.51.0-hff17c54_0       conda-forge
    libnsl:                   2.0.0-h7f98852_0        conda-forge
    libsanitizer:             12.2.0-h46fd767_19      conda-forge
    libssh2:                  1.10.0-hf14f497_3       conda-forge
    libstdcxx-devel_linux-64: 12.2.0-h3b97bd3_19      conda-forge
    libstdcxx-ng:             12.2.0-h46fd767_19      conda-forge
    libtool:                  2.4.7-h27087fc_0        conda-forge
    libunistring:             0.9.10-h7f98852_0       conda-forge
    libuv:                    1.44.2-h166bdaf_0       conda-forge
    libzlib:                  1.2.13-h166bdaf_4       conda-forge
    lz4-c:                    1.9.3-h9c3ff4c_1        conda-forge
    m4:                       1.4.18-h516909a_1001    conda-forge
    ncurses:                  6.3-h27087fc_1          conda-forge
    openssl:                  3.0.7-h0b41bf4_1        conda-forge
    perl:                     5.32.1-2_h7f98852_perl5 conda-forge
    popt:                     1.16-h0b475e3_2002      conda-forge
    rhash:                    1.4.3-h166bdaf_0        conda-forge
    rsync:                    3.2.7-h70740c4_0        conda-forge
    sysroot_linux-64:         2.12-he073ed8_15        conda-forge
    wget:                     1.20.3-ha35d2d1_1       conda-forge
    xxhash:                   0.8.0-h7f98852_3        conda-forge
    xz:                       5.2.6-h166bdaf_0        conda-forge
    zlib:                     1.2.13-h166bdaf_4       conda-forge
    zstd:                     1.5.2-h3eb15da_6        conda-forge

Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
source tree in: /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work
export PREFIX=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla
export BUILD_PREFIX=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/_build_env
export SRC_DIR=/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work
INFO: activate-binutils_linux-64.sh made the following environmental changes:
+ADDR2LINE=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-addr2line
+AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar
+AS=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-as
+CXXFILT=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++filt
+ELFEDIT=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-elfedit
+GPROF=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gprof
+LD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld
+LD_GOLD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld.gold
+NM=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-nm
+OBJCOPY=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-objcopy
+OBJDUMP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-objdump
+RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib
+READELF=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-readelf
+SIZE=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-size
+STRINGS=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strings
+STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip
INFO: activate-gcc_linux-64.sh made the following environmental changes:
+build_alias=x86_64-conda-linux-gnu
-BUILD=x86_64-conda_cos6-linux-gnu
+BUILD=x86_64-conda-linux-gnu
+CC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
+CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
+CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-2.99.475 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip -DCMAKE_FIND_ROOT_PATH_MODE_PROGRAM=NEVER -DCMAKE_FIND_ROOT_PATH_MODE_LIBRARY=ONLY -DCMAKE_FIND_ROOT_PATH_MODE_INCLUDE=ONLY -DCMAKE_FIND_ROOT_PATH=$PREFIX;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
+CMAKE_PREFIX_PATH=$PREFIX:$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr
+CONDA_BUILD_SYSROOT=$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot
+_CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_cos6_linux_gnu
+CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
+CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
+CPP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cpp
+CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include
+DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-2.99.475 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem $PREFIX/include
+GCC_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar
+GCC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc
+GCC_NM=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-nm
+GCC_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib
+host_alias=x86_64-conda-linux-gnu
+HOST=x86_64-conda-linux-gnu
+LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib
INFO: activate-gxx_linux-64.sh made the following environmental changes:
+CXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++
+CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-2.99.475 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++
+DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-2.99.475 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+GXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-g++
BORG_MPI is nompi
Ensure the current directory is ARES
-- Conda environment detected: installation default in $BUILD_PREFIX


Downloading http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio-4.0.0.tar.gz for CFITSIO_URL to cfitsio_cfitsio-4.0.0.tar.gz
=> Already downloaded cfitsio_cfitsio-4.0.0.tar.gz
Downloading https://bitbucket.org/aquila-consortium/libsharp2/get/1ea651d59b8463f1ddcfa3a4fbd30555c1b101af.zip for LIBSHARP_URL to libsharp_1ea651d59b8463f1ddcfa3a4fbd30555c1b101af.zip
=> Already downloaded libsharp_1ea651d59b8463f1ddcfa3a4fbd30555c1b101af.zip
Downloading https://sourceforge.net/projects/healpix/files/Healpix_3.81/healpix_cxx-3.81.1.tar.gz/download for HEALPIX_URL to healpix_healpix_cxx-3.81.1.tar.gz
=> Already downloaded healpix_healpix_cxx-3.81.1.tar.gz
Downloading https://github.com/ianlancetaylor/libbacktrace/archive/2446c66076480ce07a6bd868badcbceb3eeecc2e.tar.gz for BACKTRACE_URL to backtrace_2446c66076480ce07a6bd868badcbceb3eeecc2e.tar.gz
=> Already downloaded backtrace_2446c66076480ce07a6bd868badcbceb3eeecc2e.tar.gz
Downloading https://boostorg.jfrog.io/artifactory/main/release/1.80.0/source/boost_1_80_0.tar.bz2 for BOOST_URL to boost_boost_1_80_0.tar.bz2
=> Already downloaded boost_boost_1_80_0.tar.bz2
Downloading https://gitlab.com/libeigen/eigen/-/archive/3.3.0/eigen-3.4.0.tar.bz2 for EIGEN_URL to eigen_eigen-3.4.0.tar.bz2
=> Already downloaded eigen_eigen-3.4.0.tar.bz2
Downloading https://github.com/pybind/pybind11/archive/v2.10.3.tar.gz for PYBIND11_URL to pybind11_v2.10.3.tar.gz
=> Already downloaded pybind11_v2.10.3.tar.gz
Downloading https://github.com/xtensor-stack/xtensor/archive/refs/tags/0.24.3.tar.gz for XTENSOR_URL to xtensor_0.24.3.tar.gz
=> Already downloaded xtensor_0.24.3.tar.gz
Downloading https://github.com/devonmpowell/r3d/archive/b3eef85ae5dc111d0148491772e0820406cfe0ea.zip for R3D_URL to r3d_b3eef85ae5dc111d0148491772e0820406cfe0ea.zip
=> Already downloaded r3d_b3eef85ae5dc111d0148491772e0820406cfe0ea.zip
Downloading https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2.tar.gz for HDF5_URL to hdf5_hdf5-1.12.2.tar.gz
=> Already downloaded hdf5_hdf5-1.12.2.tar.gz
Downloading http://ftpmirror.gnu.org/gsl/gsl-2.3.tar.gz for GSL_URL to gsl_gsl-2.3.tar.gz
=> Already downloaded gsl_gsl-2.3.tar.gz
Downloading http://www.fftw.org/fftw-3.3.10.tar.gz for FFTW_URL to fftw_fftw-3.3.10.tar.gz
=> Already downloaded fftw_fftw-3.3.10.tar.gz
Downloading https://github.com/lesgourg/class_public/archive/refs/tags/v3.2.0.tar.gz for CLASS_CODE_URL to CLASS_CODE_URL_v3.2.0.tar.gz
=> Already downloaded CLASS_CODE_URL_v3.2.0.tar.gz
Done. You can now upload the $SRC_DIR/downloads/ directory to the remote computer in the source directory and use --use-predownload.
Ensure the current directory is ARES
-- Conda environment detected: installation default in $BUILD_PREFIX

Summary of CMAKE_FLAGS:
   -DINTERNAL_HDF5:BOOL=OFF
   -DCMAKE_INSTALL_PREFIX=$PREFIX
CMake Warning:
  Manually-specified variables were not used by the project:

    XTENSOR_URL


   -DCMAKE_BUILD_TYPE=RelWithDebInfo
   -DINTERNAL_GSL:BOOL=OFF
   -DPYTHON_EXECUTABLE=$PREFIX/bin/python
   -DBUILD_PYTHON_EXTENSION:BOOL=ON
   -DBUILD_PYTHON_EXTENSION:BOOL=ON
   -DBUILD_PYTHON_EMBEDDER:BOOL=ON
   -DINSTALL_PYTHON_LOCAL=OFF
   -DINTERNAL_BOOST:BOOL=OFF
   -DCFITSIO_URL:URL=file://$SRC_DIR/downloads/cfitsio_cfitsio-4.0.0.tar.gz
   -DLIBSHARP_URL:URL=file://$SRC_DIR/downloads/libsharp_1ea651d59b8463f1ddcfa3a4fbd30555c1b101af.zip
   -DHEALPIX_URL:URL=file://$SRC_DIR/downloads/healpix_healpix_cxx-3.81.1.tar.gz
   -DBACKTRACE_URL:URL=file://$SRC_DIR/downloads/backtrace_2446c66076480ce07a6bd868badcbceb3eeecc2e.tar.gz
   -DEIGEN_URL:URL=file://$SRC_DIR/downloads/eigen_eigen-3.4.0.tar.bz2
   -DPYBIND11_URL:URL=file://$SRC_DIR/downloads/pybind11_v2.10.3.tar.gz
   -DXTENSOR_URL:URL=file://$SRC_DIR/downloads/xtensor_0.24.3.tar.gz
   -DR3D_URL:URL=file://$SRC_DIR/downloads/r3d_b3eef85ae5dc111d0148491772e0820406cfe0ea.zip
   -DFFTW_URL:URL=file://$SRC_DIR/downloads/fftw_fftw-3.3.10.tar.gz
   -DCLASS_CODE_URL:URL=file://$SRC_DIR/downloads/CLASS_CODE_URL_v3.2.0.tar.gz
   -DCONTEXT_TIMER:BOOL=ON
   -DARES_PREFIX_PATH=$PREFIX;$PREFIX:$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr
   -DCMAKE_BUILD_TYPE=Release
   -DCMAKE_C_COMPILER=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
   -DCMAKE_CXX_COMPILER=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++
   -DCMAKE_INSTALL_PREFIX=$PREFIX
-- Found: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
-- Found: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++
-- Found: cmake
-- Found: autoconf
-- Found: automake
-- Found: patch
-- Found: pkg-config
-- The CXX compiler identification is GNU 12.2.0
-- The C compiler identification is GNU 12.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- Found PkgConfig: $PREFIX/bin/pkg-config (found version "0.29.2") 
-- Compiler ID is: C -> GNU, CXX -> GNU
-- Found Boost: $PREFIX/lib/cmake/Boost-1.77.0/BoostConfig.cmake (found suitable version "1.77.0", minimum required is "1.69") found components: random chrono regex system program_options timer stacktrace_basic stacktrace_addr2line missing components: stacktrace_backtrace
-- Boost version 1.77.0
-- HDF5 CXX compiler wrapper is unable to compile a minimal HDF5 program.
-- Found HDF5: $PREFIX/lib/libhdf5_cpp.so;$PREFIX/lib/libhdf5.so (found version "1.12.2") found components: CXX 
-- GSL paths: $PREFIX/lib/libgsl.so $PREFIX/lib/libgslcblas.so $PREFIX/include
-- Used FFTW libraries: $SRC_DIR/build/ext_install/lib/libfftw3_omp.a;$SRC_DIR/build/ext_install/lib/libfftw3.a
-- pybind11 v2.10.3 
-- Found PythonInterp: $PREFIX/bin/python (found suitable version "3.10.8", minimum required is "3.6") 
-- Found PythonLibs: $PREFIX/lib/libpython3.10.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- C compiler version: 12.2.0
-- C++ compiler Version: 12.2.0
-- ARES modules found:
--   demo (do not build)
-- Registering forward model libLSS/physics/forwards/primordial.hpp
-- Registering forward model libLSS/physics/forwards/primordialv2.hpp
-- Registering forward model libLSS/physics/forwards/primordial_as.hpp
-- Registering forward model libLSS/physics/forwards/transfer_ehu.hpp
-- Registering forward model libLSS/physics/forwards/transfer_ehuv2.hpp
-- Registering forward model libLSS/physics/forwards/transfer_class.hpp
-- Registering forward model libLSS/physics/forwards/fnl.hpp
-- Registering forward model libLSS/physics/hades_pt.hpp
-- Registering forward model libLSS/physics/haar.hpp
-- Registering forward model libLSS/physics/hades_log.hpp
-- Registering forward model libLSS/physics/forwards/upgrade.hpp
-- Registering forward model libLSS/physics/forwards/transfer.hpp
-- Registering forward model libLSS/physics/forwards/borg_lpt.hpp
-- Registering forward model libLSS/physics/forwards/borg_lpt_neutrino.hpp
-- Registering forward model libLSS/physics/forwards/borg_qlpt.hpp
-- Registering forward model libLSS/physics/forwards/borg_qlpt_rsd.hpp
-- Registering forward model libLSS/physics/forwards/borg_2lpt.hpp
-- Registering forward model libLSS/physics/forwards/borg_multi_pm.hpp
-- Registering forward model libLSS/physics/forwards/borg_multi_pm_tile.hpp
-- Registering forward model libLSS/physics/forwards/downgrade.hpp
-- Registering forward model libLSS/physics/forwards/softplus.hpp
-- Registering forward model libLSS/physics/forwards/enforceMass.hpp
-- Registering forward model libLSS/physics/forwards/patch_model.hpp
-- Registering forward model libLSS/physics/forwards/adapt_generic_bias.hpp
-- Registering forward model libLSS/physics/forwards/altair_ap.hpp
-- Registering forward model libLSS/physics/forwards/kappa_sphere.hpp
-- Registering likelihood libLSS/samplers/hades/hades_linear_likelihood.hpp
-- Registering likelihood libLSS/samplers/lensing/hades_lensing_likelihood.hpp
-- Registering likelihood libLSS/samplers/reduced_shear/hades_reduced_shear_likelihood.hpp
-- Registering likelihood libLSS/samplers/borg/borg_poisson_likelihood.hpp
-- Registering likelihood libLSS/samplers/borg/borg_null_likelihood.hpp
-- Registering likelihood libLSS/samplers/borg/borg_oct_likelihood.hpp
-- Registering likelihood libLSS/samplers/borg/borg_oct_likelihood_marg.hpp
-- Registering likelihood libLSS/samplers/borg/borg_studentT_likelihood.hpp
-- Registering likelihood libLSS/samplers/generic/generic_registry.hpp
-- ARES deps are : cfitsio;healpix;backtrace;eigen;fftw;cosmotool;class_code
-- INCLUDE_PATH=$SRC_DIR/build;$SRC_DIR/build/_deps/r3d-src
-- Extra python code: 
-- Docfiles= $SRC_DIR/build
-- System python site: $PREFIX/lib/python3.10/site-packages
-- User python site: /home/jenkins-agent/.local/lib/python3.10/site-packages
-- Python install location: $PREFIX/lib/python3.10/site-packages
-- HADES did not find JULIA
-- Julia missing, Hades_Julia disabled
-- Activate Hades_python
-- Configuring done
-- Generating done
-- Build files have been written to: $SRC_DIR/build
------------------------------------------------------------------

Configuration done.
Move to $SRC_DIR/build/ and type 'make' now.
Please check the configuration of your MPI C compiler. You may need
to set an environment variable to use the proper compiler.

Some example (for SH/BASH shells):
- OpenMPI:
    OMPI_CC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
    OMPI_CXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++
    export OMPI_CC OMPI_CXX

------------------------------------------------------------------

[  2%] Creating directories for 'class_code'
[  2%] Creating directories for 'cfitsio'
[  2%] Performing download step (verify and extract) for 'class_code'
[  2%] Performing download step (verify and extract) for 'cfitsio'
-- verifying file...
     file='$SRC_DIR/downloads/CLASS_CODE_URL_v3.2.0.tar.gz'
-- verifying file...
     file='$SRC_DIR/downloads/cfitsio_cfitsio-4.0.0.tar.gz'
-- verifying file... done
-- extracting...
     src='$SRC_DIR/downloads/cfitsio_cfitsio-4.0.0.tar.gz'
     dst='$SRC_DIR/build/external_build/cfitsio-prefix/src/cfitsio'
-- extracting... [tar xfz]
-- verifying file... done
-- extracting...
     src='$SRC_DIR/downloads/CLASS_CODE_URL_v3.2.0.tar.gz'
make[4]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
configure: WARNING: Not linking with curl for remote file i/o support
ar: creating libclass.a
     dst='$SRC_DIR/build/external_build/class-code-prefix/src/class_code'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[  5%] No update step for 'cfitsio'
[  5%] No patch step for 'cfitsio'
[  7%] Performing configure step for 'cfitsio'
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[  7%] No update step for 'class_code'
[  7%] Performing patch step for 'class_code'
patching file source/thermodynamics.c
Hunk #1 succeeded at 542 (offset 69 lines).
Hunk #2 succeeded at 559 (offset 69 lines).
Hunk #3 succeeded at 573 (offset 69 lines).
Hunk #4 succeeded at 599 (offset 69 lines).
Hunk #5 succeeded at 618 (offset 69 lines).
[  7%] Performing configure step for 'class_code'
No configure
[  7%] Performing build step for 'class_code'
checking build system type... x86_64-conda-linux-gnu
checking host system type... x86_64-conda-linux-gnu
checking target system type... x86_64-conda-linux-gnu
checking for x86_64-conda-linux-gnu-gcc... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc accepts -g... yes
checking for $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc option to accept ISO C89... none needed
checking how to run the C preprocessor... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cpp
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for x86_64-conda-linux-gnu-gcc... (cached) $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
checking whether we are using the GNU C compiler... (cached) yes
checking whether $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc accepts -g... (cached) yes
checking for $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc option to accept ISO C89... (cached) none needed
checking for gfortran... gfortran
checking whether we are using GNU Fortran... 
yes
cfitsio: == Adding wrapper support for GNU Fortran... 
 done
checking for ar... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar
checking for x86_64-conda-linux-gnu-ranlib... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
cfitsio: == Using gcc version 12.2.0
checking for inflateEnd in -lz... yes
checking whether ftruncate works... yes
checking whether long long is defined... yes
checking whether system V style IPC services are supported... yes
checking whether flock_t is defined in sys/fcntl.h... no
checking whether flock_t is defined in sys/flock.h... no
checking whether union semun is defined... no
checking for fmemopen... yes
checking for library containing gethostbyname... none required
checking for library containing connect... none required
configure: creating ./config.status
config.status: creating Makefile
configure: creating ./config.status
config.status: creating Makefile
config.status: creating cfitsio.pc

    Congratulations, Makefile update was successful.
    You may want to run "make" now.

[  7%] Performing build step for 'cfitsio'
a - build/growTable.o
a - build/dei_rkck.o
a - build/sparse.o
a - build/evolver_rkck.o
a - build/evolver_ndf15.o
a - build/arrays.o
a - build/parser.o
a - build/quadrature.o
a - build/hyperspherical.o
a - build/common.o
a - build/trigonometric_integrals.o
a - build/input.o
a - build/background.o
a - build/thermodynamics.o
a - build/perturbations.o
a - build/primordial.o
a - build/fourier.o
a - build/transfer.o
a - build/harmonic.o
a - build/lensing.o
a - build/distortions.o
a - build/wrap_recfast.o
a - build/injection.o
a - build/noninjection.o
a - build/hyrectools.o
a - build/helium.o
a - build/hydrogen.o
a - build/history.o
a - build/wrap_hyrec.o
a - build/energy_injection.o
[  7%] Performing install step for 'class_code'
-- Will copy $SRC_DIR/build/external_build/class-code-prefix/src/class_code/include/../external/bbn/sBBN.dat;$SRC_DIR/build/external_build/class-code-prefix/src/class_code/include/../external/bbn/sBBN_2017.dat;$SRC_DIR/build/external_build/class-code-prefix/src/class_code/include/../external/bbn/sBBN_2017_marcucci.dat
-- Installing: $SRC_DIR/build/ext_install/include/class_code/energy_injection.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/helium.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/history.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/hydrogen.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/hyrectools.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/wrap_hyrec.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/wrap_recfast.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/injection.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/noninjection.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/arrays.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/background.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/class.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/common.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/dei_rkck.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/distortions.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/evolver_ndf15.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/evolver_rkck.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/fourier.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/growTable.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/harmonic.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/hermite3_interpolation_csource.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/hermite4_interpolation_csource.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/hermite6_interpolation_csource.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/hyperspherical.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/input.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/lensing.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/macros_precision.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/output.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/parser.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/perturbations.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/precisions.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/primordial.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/quadrature.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/sparse.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/svnversion.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/thermodynamics.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/transfer.h
-- Installing: $SRC_DIR/build/ext_install/include/class_code/trigonometric_integrals.h
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/bbn/sBBN.dat
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/bbn/sBBN_2017.dat
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/bbn/sBBN_2017_marcucci.dat
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/hyrec/Alpha_inf.dat
Aborted by Administrator
Sending interrupt signal to process
make[4]: *** [Makefile:872: libsharp2/sharp_ylmgen_c.lo] Error 1
make[3]: *** [CMakeFiles/libsharp.dir/build.make:86: external_build/libsharp-prefix/src/libsharp-stamp/libsharp-build] Error 2
make[2]: *** [CMakeFiles/Makefile2:1474: CMakeFiles/libsharp.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
{standard input}: Assembler messages:
{standard input}:5518: Warning: end of file not at end of a line; newline inserted
{standard input}:5564: Warning: no instruction mnemonic suffix given and no register operands; using default for `movs'
x86_64-conda-linux-gnu-cc: fatal error: Terminated signal terminated program cc1
compilation terminated.
make[5]: *** [Makefile:130: f77_wrap2.o] Error 1
make[5]: *** Waiting for unfinished jobs....
make[5]: *** Deleting file 'f77_wrap3.o'
make[5]: *** [Makefile:130: f77_wrap3.o] Terminated
Terminated
make[4]: *** [Makefile:87: all] Error 143
make[3]: *** [CMakeFiles/cfitsio.dir/build.make:86: external_build/cfitsio-prefix/src/cfitsio-stamp/cfitsio-build] Error 2
make[2]: *** [CMakeFiles/Makefile2:1448: CMakeFiles/cfitsio.dir/all] Error 2
make[1]: *** [CMakeFiles/Makefile2:6727: python/CMakeFiles/python-install.dir/rule] Error 2
make: *** [Makefile:2831: python-install] Error 2
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/hyrec/R_inf.dat
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/hyrec/fit_swift.dat
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/hyrec/input.dat
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/hyrec/output_xe.dat
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/hyrec/two_photon_tables.dat
-- Installing: $SRC_DIR/build/ext_install/share/aquila_borg/class/hyrec/two_photon_tables_hires.dat
[  7%] Completed 'class_code'
[  7%] Built target class_code
[ 10%] Creating directories for 'libsharp'
[ 10%] Performing download step (verify and extract) for 'libsharp'
-- verifying file...
     file='$SRC_DIR/downloads/libsharp_1ea651d59b8463f1ddcfa3a4fbd30555c1b101af.zip'
-- verifying file... done
-- extracting...
     src='$SRC_DIR/downloads/libsharp_1ea651d59b8463f1ddcfa3a4fbd30555c1b101af.zip'
     dst='$SRC_DIR/build/external_build/libsharp-prefix/src/libsharp'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 10%] No update step for 'libsharp'
[ 10%] No patch step for 'libsharp'
[ 10%] Performing configure step for 'libsharp'
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether make supports the include directive... yes (GNU style)
checking for x86_64-conda-linux-gnu-gcc... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc accepts -g... yes
checking for $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc option to accept ISO C89... none needed
checking whether $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc understands -c and -o together... yes
checking dependency style of $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc... none
checking for x86_64-conda-linux-gnu-ar... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar
checking the archiver ($BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar) interface... ar
checking build system type... x86_64-conda-linux-gnu
checking host system type... x86_64-conda-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld
checking if the linker ($BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-nm
checking the name lister ($BUILD_PREFIX/bin/x86_64-conda-linux-gnu-nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-conda-linux-gnu file names to x86_64-conda-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-conda-linux-gnu file names to toolchain format... func_convert_file_noop
checking for $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld option to reload object files... -r
checking for x86_64-conda-linux-gnu-objdump... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-conda-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-conda-linux-gnu-ar... (cached) $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar
checking for archiver @FILE support... @
checking for x86_64-conda-linux-gnu-strip... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip
checking for x86_64-conda-linux-gnu-ranlib... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib
checking command to parse $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-nm output from $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for x86_64-conda-linux-gnu-mt... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cpp
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc supports -fno-rtti -fno-exceptions... no
checking for $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc option to produce PIC... -fPIC -DPIC
checking if $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc PIC flag -fPIC -DPIC works... yes
checking if $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc static flag -static works... yes
checking if $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc supports -c -o file.o... yes
checking if $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc supports -c -o file.o... (cached) yes
checking whether the $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc linker ($BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking for $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc option to accept ISO C99... none needed
checking for $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc option to support OpenMP... -fopenmp
checking our pkgconfig libname... libsharp2
checking our pkgconfig version... 1.0.0
checking our pkgconfig_libdir... ${libdir}/pkgconfig
expanded our pkgconfig_libdir... $SRC_DIR/build/ext_install/lib/pkgconfig
checking our pkgconfig_libfile... libsharp2.pc
checking our package / suffix... libsharp2 / 
checking our pkgconfig description... libsharp2 Library
checking our pkgconfig requires... 
checking our pkgconfig ext libs... -lsharp2 -lm
checking our pkgconfig cppflags... -fopenmp
checking our pkgconfig ldflags... -fopenmp
noninstalled pkgconfig -L $SRC_DIR/build/external_build/libsharp-prefix/src/libsharp-build/.libs
noninstalled pkgconfig -I /$SRC_DIR/build/external_build/libsharp-prefix/src/libsharp
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing libsharp2.pc commands
config.status: creating libsharp2.pc.in
config.status: creating libsharp2.pc
config.status: creating libsharp2-uninstalled.pc
config.status: creating libsharp2-uninstalled.sh
[ 10%] Performing build step for 'libsharp'
  CC       libsharp2/pocketfft.lo
  CC       libsharp2/sharp_utils.lo
  CC       libsharp2/sharp.lo
  CC       libsharp2/sharp_almhelpers.lo
  CC       libsharp2/sharp_core.lo
  CC       libsharp2/sharp_geomhelpers.lo
  CC       libsharp2/sharp_legendre_roots.lo
  CC       libsharp2/sharp_ylmgen_c.lo
Traceback (most recent call last):
  File "/build/jenkins/miniconda3/envs/builder/bin/conda-build", line 11, in <module>
    sys.exit(main())
  File "/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/cli/main_build.py", line 488, in main
    execute(sys.argv[1:])
  File "/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/cli/main_build.py", line 477, in execute
    outputs = api.build(args.recipe, post=args.post, test_run_post=args.test_run_post,
  File "/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/api.py", line 186, in build
    return build_tree(
  File "/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/build.py", line 3088, in build_tree
    packages_from_this = build(metadata, stats,
  File "/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/build.py", line 2211, in build
    utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
  File "/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/utils.py", line 411, in check_call_env
    return _func_defaulting_env_to_os_environ('call', *popenargs, **kwargs)
  File "/build/jenkins/miniconda3/envs/builder/lib/python3.9/site-packages/conda_build/utils.py", line 391, in _func_defaulting_env_to_os_environ
    raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1674394997846/work/conda_build.sh']' returned non-zero exit status 2.
Terminated
script returned exit code 143
Aborted by Administrator
[Pipeline] }
Click here to forcibly terminate running steps
[Pipeline] // timeout
Click here to forcibly terminate running steps
[Pipeline] }
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 597898 killed;
[ssh-agent] Stopped.
[Pipeline] // sshagent
[Pipeline] }

[Pipeline] // ansiColor
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Conda deploy Linux)
Stage "Conda deploy Linux" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
Failed in branch Build & deploy on linux
[Pipeline] // parallel
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] node
Running on macos-x86 in /Users/jenkins-x86/jenkins/workspace/borg_conda_release_3.1
[Pipeline] {
[Pipeline] dir
Running in /Users/jenkins-x86/jenkins/workspace/borg_conda_release_3.1/jenkins-borg_conda-release%2F3.1-1
[Pipeline] {
[Pipeline] deleteDir
[Pipeline] }
[Pipeline] // dir
[Pipeline] dir
Running in /Users/jenkins-x86/jenkins/workspace/borg_conda_release_3.1@tmp
[Pipeline] {
[Pipeline] deleteDir
[Pipeline] }
[Pipeline] // dir
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withCredentials
[Pipeline] End of Pipeline
Finished: ABORTED