libtool: compile: $PREFIX/bin/mpicc -DHAVE_CONFIG_H -I. -I$SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi -I.. -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-3.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -MT rdft-solve.lo -MD -MP -MF .deps/rdft-solve.Tpo -c $SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi/rdft-solve.c -fPIC -DPIC -o rdft-solve.o
libtool: compile: $PREFIX/bin/mpicc -DHAVE_CONFIG_H -I. -I$SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi -I.. -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-3.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -MT rdft2-serial.lo -MD -MP -MF .deps/rdft2-serial.Tpo -c $SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi/rdft2-serial.c -fPIC -DPIC -o rdft2-serial.o
libtool: compile: $PREFIX/bin/mpicc -DHAVE_CONFIG_H -I. -I$SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi -I.. -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-3.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -MT rdft2-rank-geq2.lo -MD -MP -MF .deps/rdft2-rank-geq2.Tpo -c $SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi/rdft2-rank-geq2.c -fPIC -DPIC -o rdft2-rank-geq2.o
libtool: compile: $PREFIX/bin/mpicc -DHAVE_CONFIG_H -I. -I$SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi -I.. -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-3.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -MT rdft2-rank-geq2-transposed.lo -MD -MP -MF .deps/rdft2-rank-geq2-transposed.Tpo -c $SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi/rdft2-rank-geq2-transposed.c -fPIC -DPIC -o rdft2-rank-geq2-transposed.o
libtool: compile: $PREFIX/bin/mpicc -DHAVE_CONFIG_H -I. -I$SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi -I.. -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-3.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -MT rdft2-problem.lo -MD -MP -MF .deps/rdft2-problem.Tpo -c $SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi/rdft2-problem.c -fPIC -DPIC -o rdft2-problem.o
libtool: compile: $PREFIX/bin/mpicc -DHAVE_CONFIG_H -I. -I$SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi -I.. -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw -I $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-3.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -MT rdft2-solve.lo -MD -MP -MF .deps/rdft2-solve.Tpo -c $SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi/rdft2-solve.c -fPIC -DPIC -o rdft2-solve.o
libtool: link: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar cr .libs/libfftw3_mpi.a any-true.o api.o block.o choose-radix.o conf.o dtensor.o rearrange.o wisdom-api.o f03-wrap.o transpose-alltoall.o transpose-pairwise.o transpose-recurse.o transpose-problem.o transpose-solve.o dft-serial.o dft-rank-geq2.o dft-rank-geq2-transposed.o dft-rank1.o dft-rank1-bigvec.o dft-problem.o dft-solve.o rdft-serial.o rdft-rank-geq2.o rdft-rank-geq2-transposed.o rdft-rank1-bigvec.o rdft-problem.o rdft-solve.o rdft2-serial.o rdft2-rank-geq2.o rdft2-rank-geq2-transposed.o rdft2-problem.o rdft2-solve.o
libtool: link: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib .libs/libfftw3_mpi.a
libtool: link: ( cd ".libs" && rm -f "libfftw3_mpi.la" && ln -s "../libfftw3_mpi.la" "libfftw3_mpi.la" )
libtool: link: $PREFIX/bin/mpicc -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-3.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath -Wl,$PREFIX/lib -Wl,-rpath-link -Wl,$PREFIX/lib -o mpi-bench mpi_bench-mpi-bench.o mpi_bench-fftw-bench.o mpi_bench-hook.o -L$PREFIX/lib ./.libs/libfftw3_mpi.a ../threads/.libs/libfftw3_omp.a $SRC_DIR/build/external_build/fftw-prefix/src/fftw-build/.libs/libfftw3.a ../.libs/libfftw3.a ../libbench2/libbench2.a -lm -fopenmp
Making all in doc
Making all in FAQ
Making all in tools
libtool: link: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/aquila_borg-3.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath -Wl,$PREFIX/lib -Wl,-rpath-link -Wl,$PREFIX/lib -o fftw-wisdom fftw_wisdom-fftw-wisdom.o ../tests/bench-bench.o ../tests/bench-fftw-bench.o -L$PREFIX/lib ../threads/.libs/libfftw3_omp.a $SRC_DIR/build/external_build/fftw-prefix/src/fftw-build/.libs/libfftw3.a ../.libs/libfftw3.a ../libbench2/libbench2.a -lm -fopenmp
Making all in m4
[ 23%] Performing install step for 'fftw'
Making install in support
Making install in kernel
Making install in simd-support
Making install in dft
Making install in scalar
Making install in codelets
Making install in simd
Making install in common
Making install in sse2
Making install in avx
Making install in avx-128-fma
Making install in avx2
Making install in avx2-128
Making install in avx512
Making install in kcvi
Making install in altivec
Making install in vsx
Making install in neon
Making install in generic-simd128
Making install in generic-simd256
Making install in rdft
Making install in scalar
Making install in r2cf
Making install in r2cb
Making install in r2r
Making install in simd
Making install in common
Making install in sse2
Making install in avx
Making install in avx-128-fma
Making install in avx2
Making install in avx2-128
Making install in avx512
Making install in kcvi
Making install in altivec
Making install in vsx
Making install in neon
Making install in generic-simd128
Making install in generic-simd256
Making install in reodft
Making install in api
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/include'
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/include'
/usr/bin/install -c -m 644 $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api/fftw3.h $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api/fftw3.f $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api/fftw3l.f03 $SRC_DIR/build/external_build/fftw-prefix/src/fftw/api/fftw3q.f03 '$SRC_DIR/build/ext_install/include'
/usr/bin/install -c -m 644 fftw3.f03 '$SRC_DIR/build/ext_install/include'
Making install in libbench2
Making install in .
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/lib'
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/lib/cmake/fftw3'
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/lib/pkgconfig'
/bin/bash ./libtool --mode=install /usr/bin/install -c libfftw3.la '$SRC_DIR/build/ext_install/lib'
/usr/bin/install -c -m 644 FFTW3Config.cmake FFTW3ConfigVersion.cmake '$SRC_DIR/build/ext_install/lib/cmake/fftw3'
/usr/bin/install -c -m 644 fftw3.pc '$SRC_DIR/build/ext_install/lib/pkgconfig'
libtool: install: /usr/bin/install -c .libs/libfftw3.lai $SRC_DIR/build/ext_install/lib/libfftw3.la
libtool: install: /usr/bin/install -c .libs/libfftw3.a $SRC_DIR/build/ext_install/lib/libfftw3.a
libtool: install: chmod 644 $SRC_DIR/build/ext_install/lib/libfftw3.a
libtool: install: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib $SRC_DIR/build/ext_install/lib/libfftw3.a
libtool: finish: PATH="$BUILD_PREFIX/bin:$PREFIX/bin:/build/jenkins/miniconda3/envs/builder/condabin:$BUILD_PREFIX/bin:$PREFIX/bin:/build/jenkins/miniconda3/envs/builder/bin:/build/jenkins/miniconda3/envs/builder/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/sbin" ldconfig -n $SRC_DIR/build/ext_install/lib
----------------------------------------------------------------------
Libraries have been installed in:
$SRC_DIR/build/ext_install/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the '-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the 'LD_RUN_PATH' environment variable
during linking
- use the '-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to '/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
Making install in threads
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/lib'
/bin/bash ../libtool --mode=install /usr/bin/install -c libfftw3_omp.la '$SRC_DIR/build/ext_install/lib'
libtool: install: /usr/bin/install -c .libs/libfftw3_omp.lai $SRC_DIR/build/ext_install/lib/libfftw3_omp.la
libtool: install: /usr/bin/install -c .libs/libfftw3_omp.a $SRC_DIR/build/ext_install/lib/libfftw3_omp.a
libtool: install: chmod 644 $SRC_DIR/build/ext_install/lib/libfftw3_omp.a
libtool: install: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib $SRC_DIR/build/ext_install/lib/libfftw3_omp.a
libtool: finish: PATH="$BUILD_PREFIX/bin:$PREFIX/bin:/build/jenkins/miniconda3/envs/builder/condabin:$BUILD_PREFIX/bin:$PREFIX/bin:/build/jenkins/miniconda3/envs/builder/bin:/build/jenkins/miniconda3/envs/builder/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/sbin" ldconfig -n $SRC_DIR/build/ext_install/lib
----------------------------------------------------------------------
Libraries have been installed in:
$SRC_DIR/build/ext_install/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the '-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the 'LD_RUN_PATH' environment variable
during linking
- use the '-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to '/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
Making install in tests
Making install in mpi
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/lib'
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/include'
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/include'
/bin/bash ../libtool --mode=install /usr/bin/install -c libfftw3_mpi.la '$SRC_DIR/build/ext_install/lib'
/usr/bin/install -c -m 644 $SRC_DIR/build/external_build/fftw-prefix/src/fftw/mpi/fftw3-mpi.h '$SRC_DIR/build/ext_install/include'
/usr/bin/install -c -m 644 fftw3-mpi.f03 fftw3l-mpi.f03 '$SRC_DIR/build/ext_install/include'
libtool: install: /usr/bin/install -c .libs/libfftw3_mpi.lai $SRC_DIR/build/ext_install/lib/libfftw3_mpi.la
libtool: install: /usr/bin/install -c .libs/libfftw3_mpi.a $SRC_DIR/build/ext_install/lib/libfftw3_mpi.a
libtool: install: chmod 644 $SRC_DIR/build/ext_install/lib/libfftw3_mpi.a
libtool: install: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib $SRC_DIR/build/ext_install/lib/libfftw3_mpi.a
CMake Warning (dev) at /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_build_env/share/cmake-3.28/Modules/ExternalProject.cmake:3195 (message):
The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is
not set. The policy's OLD behavior will be used. When using a URL
download, the timestamps of extracted files should preferably be that of
the time of extraction, otherwise code that depends on the extracted
contents might not be rebuilt if the URL changes. The OLD behavior
preserves the timestamps from the archive instead, but this is usually not
what you want. Update your project to the NEW behavior or specify the
DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this
robustness issue.
Call Stack (most recent call first):
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_build_env/share/cmake-3.28/Modules/ExternalProject.cmake:4418 (_ep_add_download_command)
external/external_build.cmake:412 (ExternalProject_Add)
CMakeLists.txt:56 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning at omptl-stamp/verify-omptl.cmake:15 (message):
File will not be verified since no URL_HASH specified
libtool: finish: PATH="$BUILD_PREFIX/bin:$PREFIX/bin:/build/jenkins/miniconda3/envs/builder/condabin:$BUILD_PREFIX/bin:$PREFIX/bin:/build/jenkins/miniconda3/envs/builder/bin:/build/jenkins/miniconda3/envs/builder/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/sbin" ldconfig -n $SRC_DIR/build/ext_install/lib
----------------------------------------------------------------------
Libraries have been installed in:
$SRC_DIR/build/ext_install/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the '-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the 'LD_RUN_PATH' environment variable
during linking
- use the '-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to '/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
Making install in doc
Making install in FAQ
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/share/info'
/usr/bin/install -c -m 644 $SRC_DIR/build/external_build/fftw-prefix/src/fftw/doc/fftw3.info $SRC_DIR/build/external_build/fftw-prefix/src/fftw/doc/fftw3.info-1 $SRC_DIR/build/external_build/fftw-prefix/src/fftw/doc/fftw3.info-2 '$SRC_DIR/build/ext_install/share/info'
install-info --info-dir='$SRC_DIR/build/ext_install/share/info' '$SRC_DIR/build/ext_install/share/info/fftw3.info'
Making install in tools
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/bin'
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/bin'
/usr/bin/mkdir -p '$SRC_DIR/build/ext_install/share/man/man1'
/bin/bash ../libtool --mode=install /usr/bin/install -c fftw-wisdom '$SRC_DIR/build/ext_install/bin'
/usr/bin/install -c fftw-wisdom-to-conf '$SRC_DIR/build/ext_install/bin'
/usr/bin/install -c -m 644 $SRC_DIR/build/external_build/fftw-prefix/src/fftw/tools/fftw-wisdom-to-conf.1 fftw-wisdom.1 '$SRC_DIR/build/ext_install/share/man/man1'
libtool: install: /usr/bin/install -c fftw-wisdom $SRC_DIR/build/ext_install/bin/fftw-wisdom
Making install in m4
[ 23%] Completed 'fftw'
[ 23%] Built target fftw
[ 23%] Creating directories for 'cosmotool'
[ 23%] No download step for 'cosmotool'
[ 23%] No update step for 'cosmotool'
[ 23%] No patch step for 'cosmotool'
[ 23%] Performing configure step for 'cosmotool'
loading initial cache file $SRC_DIR/build/external_build/cosmotool-prefix/tmp/cosmotool-cache-Release.cmake
-- The C compiler identification is GNU 13.2.0
-- The CXX compiler identification is GNU 13.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PkgConfig: $PREFIX/bin/pkg-config (found version "0.29.2")
-- Using the target CosmoTool to build python module
-- RT found, linking against it
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Could not find HDF5 cmake config. Try classical exploration
-- Found HDF5: $PREFIX/lib/libhdf5.so;$PREFIX/lib/libcrypto.so;$PREFIX/lib/libcurl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/librt.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libpthread.so;$PREFIX/lib/libsz.so;$PREFIX/lib/libz.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libdl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libm.so;$PREFIX/lib/libhdf5_cpp.so;$PREFIX/lib/libhdf5.so;$PREFIX/lib/libcrypto.so;$PREFIX/lib/libcurl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/librt.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libpthread.so;$PREFIX/lib/libsz.so;$PREFIX/lib/libz.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libdl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libm.so (found version "1.14.0") found components: C CXX HL
-- HDF5 lib: $PREFIX/lib/libhdf5.so;$PREFIX/lib/libcrypto.so;$PREFIX/lib/libcurl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/librt.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libpthread.so;$PREFIX/lib/libsz.so;$PREFIX/lib/libz.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libdl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libm.so;$PREFIX/lib/libhdf5_cpp.so;$PREFIX/lib/libhdf5.so;$PREFIX/lib/libcrypto.so;$PREFIX/lib/libcurl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/librt.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libpthread.so;$PREFIX/lib/libsz.so;$PREFIX/lib/libz.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libdl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libm.so
-- HDF5 includes: $PREFIX/include;/home/conda/feedstock_root/build_artifacts/hdf5_1678272894226/work/src/H5FDsubfiling
-- HDF5 C lib:
-- HDF5 HL lib:
-- HDF5 BIN:
-- HDF5 libpath: $PREFIX/lib
-- Boost has been found (version=1.81.0), Boost_TARGET=
-- Checking for module 'fftw3>=3.3'
-- Found fftw3, version 3.3.10
-- Checking for module 'fftw3f>=3.3'
-- Found fftw3f, version 3.3.10
-- Checking for module 'eigen3'
-- Found eigen3, version 3.4.0
-- Found EIGEN3 in $PREFIX/include/eigen3
-- Could NOT find NetCDF (missing: NETCDF_LIBRARY NETCDFCPP_LIBRARY NETCDF_INCLUDE_PATH)
-- Found GSL: $PREFIX/lib/libgsl.so
-- CosmoTool_LIBS: $PREFIX/lib/libgsl.so;$PREFIX/lib/libgslcblas.so;Boost::boost;$PREFIX/lib/libhdf5_cpp.so;$PREFIX/lib/libhdf5.so;$PREFIX/lib/libcrypto.so;$PREFIX/lib/libcurl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/librt.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libpthread.so;$PREFIX/lib/libsz.so;$PREFIX/lib/libz.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libdl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libm.so;$PREFIX/lib/libhdf5_hl.so;$PREFIX/lib/libhdf5_hl_cpp.so;$PREFIX/lib/libhdf5_hl.so;$PREFIX/lib/libhdf5.so;$PREFIX/lib/libcrypto.so;$PREFIX/lib/libcurl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/librt.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libpthread.so;$PREFIX/lib/libsz.so;$PREFIX/lib/libz.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libdl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libm.so;$PREFIX/lib/libhdf5_cpp.so;$PREFIX/lib/libhdf5.so;$PREFIX/lib/libcrypto.so;$PREFIX/lib/libcurl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/librt.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libpthread.so;$PREFIX/lib/libsz.so;$PREFIX/lib/libz.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libdl.so;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr/lib/libm.so
-- Configuring done (4.0s)
-- Generating done (0.1s)
-- Build files have been written to: $SRC_DIR/build/external_build/cosmotool-prefix/src/cosmotool-build
[ 23%] Performing build step for 'cosmotool'
[ 1%] Creating directories for 'omptl'
[ 3%] Performing download step (verify and extract) for 'omptl'
-- extracting...
src='$SRC_DIR/external/cosmotool/external/omptl-20120422.tar.bz2'
dst='$SRC_DIR/build/external_build/cosmotool-prefix/src/cosmotool-build/external_build/omptl-prefix/src/omptl'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 5%] No update step for 'omptl'
[ 6%] Performing patch step for 'omptl'
patching file omptl_algorithm
patching file omptl_algorithm_par.h
patching file omptl_algorithm_ser.h
patching file omptl_numeric
patching file omptl_numeric_extensions.h
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:30,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/loadGadget.cpp:42:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/sample/testInterpolate.cpp:37:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/interpolate3d.hpp:102:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
102 | throw (InvalidArgumentException)
| ^~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/sample/testDelaunay.cpp:38:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/dinterpolate.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
85 | throw (InvalidArgumentException)
| ^~~~~
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/dinterpolate.hpp:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
113 | throw (InvalidArgumentException);
| ^~~~~
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/dinterpolate.hpp:120:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
120 | throw (InvalidArgumentException);
| ^~~~~
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/dinterpolate.hpp:123:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
123 | throw (InvalidArgumentException);
| ^~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/dinterpolate.hpp:127:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/dinterpolate.tcc:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
88 | throw(InvalidArgumentException)
| ^~~~~
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/dinterpolate.tcc:254:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
254 | throw (InvalidArgumentException)
| ^~~~~
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/dinterpolate.tcc:304:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
304 | throw (InvalidArgumentException)
| ^~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/yield_k.hpp:23,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock.hpp:42,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/shared_ptr.hpp:29,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/shared_ptr.hpp:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/sphSmooth.hpp:38,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/sample/simple3DFilter.cpp:6:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/yield_k.hpp:23,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock.hpp:42,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/smart_ptr/shared_ptr.hpp:29,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/shared_ptr.hpp:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/sphSmooth.hpp:38,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/sample/simpleDistanceFilter.cpp:5:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/math/constants/constants.hpp:10,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/src/special_math.hpp:13,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/external/cosmotool/sample/test_special.cpp:2:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
| ^~~~~~~
patching file omptl_numeric_par.h
patching file omptl_tools.h
[ 8%] Performing configure step for 'omptl'
No configure
[ 10%] Performing build step for 'omptl'
No build
[ 11%] Performing install step for 'omptl'
[ 13%] Completed 'omptl'
[ 13%] Built target omptl
[ 15%] Building CXX object src/CMakeFiles/CosmoHDF5.dir/h5_readFlash.cpp.o
[ 16%] Building CXX object src/CMakeFiles/CosmoHDF5.dir/loadFlash.cpp.o
[ 16%] Built target CosmoHDF5
[ 18%] Building CXX object src/CMakeFiles/CosmoTool.dir/fortran.cpp.o
[ 20%] Building CXX object src/CMakeFiles/CosmoTool.dir/interpolate.cpp.o
[ 22%] Building CXX object src/CMakeFiles/CosmoTool.dir/load_data.cpp.o
[ 23%] Building CXX object src/CMakeFiles/CosmoTool.dir/loadRamses.cpp.o
[ 25%] Building CXX object src/CMakeFiles/CosmoTool.dir/powerSpectrum.cpp.o
[ 27%] Building CXX object src/CMakeFiles/CosmoTool.dir/miniargs.cpp.o
[ 28%] Building CXX object src/CMakeFiles/CosmoTool.dir/growthFactor.cpp.o
[ 30%] Building CXX object src/CMakeFiles/CosmoTool.dir/cosmopower.cpp.o
[ 32%] Building CXX object src/CMakeFiles/CosmoTool.dir/cic.cpp.o
[ 33%] Building CXX object src/CMakeFiles/CosmoTool.dir/loadGadget.cpp.o
[ 35%] Linking CXX static library libCosmoTool.a
[ 35%] Built target CosmoTool
[ 37%] Building CXX object sample/CMakeFiles/testBQueue.dir/testBQueue.cpp.o
[ 38%] Building CXX object sample/CMakeFiles/testInterpolate.dir/testInterpolate.cpp.o
[ 40%] Building CXX object sample/CMakeFiles/testkd2.dir/testkd2.cpp.o
[ 42%] Building CXX object sample/CMakeFiles/testkd.dir/testkd.cpp.o
[ 44%] Linking CXX executable testBQueue
[ 45%] Linking CXX executable testInterpolate
[ 45%] Built target testBQueue
[ 47%] Building CXX object sample/CMakeFiles/testkd3.dir/testkd3.cpp.o
[ 47%] Built target testInterpolate
[ 49%] Building CXX object sample/CMakeFiles/testDelaunay.dir/testDelaunay.cpp.o
[ 50%] Linking CXX executable testkd2
[ 50%] Built target testkd2
[ 52%] Building CXX object sample/CMakeFiles/testNewton.dir/testNewton.cpp.o
[ 54%] Linking CXX executable testNewton
[ 55%] Linking CXX executable testkd3
[ 57%] Linking CXX executable testkd
[ 57%] Built target testkd3
[ 59%] Building CXX object sample/CMakeFiles/testPool.dir/testPool.cpp.o
[ 59%] Built target testkd
[ 61%] Building CXX object sample/CMakeFiles/testReadFlash.dir/testReadFlash.cpp.o
[ 61%] Built target testNewton
[ 62%] Building CXX object sample/CMakeFiles/testEskow.dir/testEskow.cpp.o
[ 64%] Linking CXX executable testDelaunay
[ 66%] Linking CXX executable testPool
[ 67%] Linking CXX executable testReadFlash
[ 67%] Built target testDelaunay
[ 69%] Building CXX object sample/CMakeFiles/testAlgo.dir/testAlgo.cpp.o
[ 69%] Built target testPool
[ 71%] Building CXX object sample/CMakeFiles/testBSP.dir/testBSP.cpp.o
[ 72%] Linking CXX executable testBSP
[ 72%] Built target testReadFlash
[ 74%] Building CXX object sample/CMakeFiles/test_cosmopower.dir/test_cosmopower.cpp.o
[ 74%] Built target testBSP
[ 76%] Building CXX object sample/CMakeFiles/simple3DFilter.dir/simple3DFilter.cpp.o
[ 77%] Linking CXX executable testAlgo
[ 79%] Linking CXX executable testEskow
[ 81%] Linking CXX executable test_cosmopower
[ 81%] Built target testEskow
[ 83%] Building CXX object sample/CMakeFiles/simpleDistanceFilter.dir/simpleDistanceFilter.cpp.o
[ 83%] Built target test_cosmopower
[ 83%] Built target testAlgo
[ 84%] Building CXX object sample/CMakeFiles/gadgetToArray.dir/gadgetToArray.cpp.o
[ 86%] Building CXX object sample/CMakeFiles/testHDF5.dir/testHDF5.cpp.o
[ 88%] Linking CXX executable gadgetToArray
[ 88%] Built target gadgetToArray
[ 89%] Building CXX object sample/CMakeFiles/graficToDensity.dir/graficToDensity.cpp.o
[ 91%] Linking CXX executable simpleDistanceFilter
[ 91%] Built target simpleDistanceFilter
[ 93%] Building CXX object sample/CMakeFiles/test_special.dir/test_special.cpp.o
[ 94%] Linking CXX executable graficToDensity
[ 96%] Linking CXX executable testHDF5
[ 96%] Built target graficToDensity
[ 96%] Built target testHDF5
[ 98%] Linking CXX executable test_special
[ 98%] Built target test_special
[100%] Linking CXX executable simple3DFilter
[100%] Built target simple3DFilter
[ 25%] Performing install step for 'cosmotool'
[ 13%] Built target omptl
[ 16%] Built target CosmoHDF5
[ 35%] Built target CosmoTool
[ 38%] Built target testBQueue
[ 42%] Built target testInterpolate
[ 45%] Built target testkd
[ 49%] Built target testkd2
[ 52%] Built target testkd3
[ 55%] Built target testNewton
[ 59%] Built target testPool
[ 62%] Built target testReadFlash
[ 66%] Built target testAlgo
[ 69%] Built target testDelaunay
[ 72%] Built target testBSP
[ 76%] Built target testEskow
[ 79%] Built target test_cosmopower
[ 83%] Built target simple3DFilter
[ 86%] Built target simpleDistanceFilter
[ 89%] Built target gadgetToArray
[ 93%] Built target graficToDensity
[ 96%] Built target test_special
[100%] Built target testHDF5
Install the project...
-- Install configuration: ""
-- Installing: $SRC_DIR/build/ext_install/lib/libCosmoTool.a
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/.
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./interpolate.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./powerSpectrum.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./loadFlash.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./kdtree_leaf.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./field.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./interpolate3d.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./symbol_visible.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./bqueue.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./cic.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./yorick.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fixArray.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./kdtree_splitters.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./mykdtree.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/healpix.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/euclidian.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/fft
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/fft/fftw_calls_mpi.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/fft/fftw_calls.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/fft/fftw_complex.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/base_types.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/healpix_spectrum.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/euclidian_transform.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/euclidian_maps.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/euclidian_spectrum_1d_bin.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/euclidian_spectrum_1d.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/healpix_transform.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/healpix_map.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/healpix_utility.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details/healpix_alms.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./miniargs.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./loadSimu.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./numpy_adaptors.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./sphSmooth.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./algo.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./h5_readFlash.hpp
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.cpp:20:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mcmc/state_element.hpp:18,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mcmc/state_element.cpp:14:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mcmc/state_element.cpp:12:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/hdf5_error.cpp:12:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/hdf5_error.cpp:11:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./sparseGrid.tcc
-- Installing: $SRC_DIR/build/ext_install/bin/simple3DFilter
-- Installing: $SRC_DIR/build/ext_install/bin/simpleDistanceFilter
[ 25%] Completed 'cosmotool'
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[ 25%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/ares_version.cpp.o
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[ 25%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/data/galaxies.cpp.o
[ 28%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/cosmo.cpp.o
[ 28%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/class_cosmo.cpp.o
[ 28%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/mcmc/state_element.cpp.o
[ 28%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/mcmc/global_state.cpp.o
[ 28%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/static_init.cpp.o
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[ 30%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/hdf5_type.cpp.o
[ 30%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/gsl_error.cpp.o
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[ 33%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/powerspectrum/measure.cpp.o
[ 35%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/ref_registry.cpp.o
[ 35%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/tbb.cpp.o
[ 35%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/fftw.cpp.o
[ 35%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/sort/peano.cpp.o
[ 35%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/ares/gibbs_messenger.cpp.o
[ 35%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/ares/powerspectrum_a_sampler.cpp.o
[ 38%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/ares/powerspectrum_b_sampler.cpp.o
[ 38%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/ares/powerspectrum_c_sampler.cpp.o
[ 38%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/ares/linbias_sampler.cpp.o
[ 38%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/ares/synthetic_selection.cpp.o
[ 38%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/ares/negative_foreground_sampler.cpp.o
[ 38%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/main_loop.cpp.o
[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/markov.cpp.o
[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/gig_sampler.cc.o
[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/powerspec_tools.cpp.o
[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/gridLikelihoodBase.cpp.o
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[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/simpleLikelihood.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/generate_random_field.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/hades/base_likelihood.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/hades/hades_linear_likelihood.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/borg/borg_poisson_likelihood.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/borg/borg_poisson_meta.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/borg/borg_null_likelihood.cpp.o
[ 46%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/rgen/density_sampler.cpp.o
[ 46%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/rgen/hmc/hmc_density_sampler.cpp.o
[ 46%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/rgen/realhmc/hmc_density_sampler.cpp.o
[ 46%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/rgen/hmc2/hmc2_density_sampler.cpp.o
[ 46%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/rgen/ao-hmc/ao_hmc_density_sampler.cpp.o
[ 46%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/model_io.cpp.o
[ 48%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forward_model.cpp.o
[ 48%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forward_model_capsule.cpp.o
[ 48%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/data/data_representation.cpp.o
[ 48%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/data/mixer_representation.cpp.o
[ 48%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/data/chain_transformation_representation.cpp.o
[ 48%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/data/converters.cpp.o
[ 51%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/data/tiledarray_representation.cpp.o
[ 51%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/data/modelio_representation.cpp.o
[ 51%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/primordialv2.cpp.o
[ 51%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/primordial_as.cpp.o
[ 51%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/fnl.cpp.o
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[ 53%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/transfer_ehuv2.cpp.o
[ 53%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/transfer_class.cpp.o
[ 53%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/registry.cpp.o
[ 53%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/chain_forward_model.cpp.o
[ 53%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/branch.cpp.o
[ 53%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/sum.cpp.o
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[ 56%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/hades_log.cpp.o
[ 56%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/upgrade.cpp.o
[ 56%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/hermiticity_fixup.cpp.o
[ 56%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/general_model_io.cpp.o
[ 56%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/tiled_array.cpp.o
[ 58%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/bias/biases.cpp.o
[ 58%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/likelihoods/likelihoods.cpp.o
[ 58%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/projector_lensing.cpp.o
[ 58%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_lpt.cpp.o
[ 58%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_qlpt.cpp.o
[ 58%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_qlpt_rsd.cpp.o
[ 61%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_multi_pm.cpp.o
[ 61%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_multi_pm_tile.cpp.o
[ 61%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_2lpt.cpp.o
[ 61%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/transfer.cpp.o
[ 61%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/softplus.cpp.o
[ 61%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/enforceMass.cpp.o
[ 64%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/forwards/downgrade.cpp.o
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/samplers/borg/borg_poisson_likelihood.cpp:21:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/samplers/borg/borg_poisson_likelihood.cpp:19:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/samplers/borg/borg_null_likelihood.cpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/samplers/borg/borg_null_likelihood.cpp:16:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./pool.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./bsp_simple.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./growthFactor.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./special_math.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./replicateGenerator.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./sparseGrid.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./cosmopower.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./octTree.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./fortran.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./hdf5_array.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./load_data.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./mach.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./config.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./loadGadget.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./eskow.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./loadRamses.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./tf_fit.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./dinterpolate.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./newton.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./openmp.hpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_numeric_extensions_ser.h
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_numeric
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/numeric
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_numeric_par.h
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_algorithm_par.h
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/Example.cpp
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_tools.h
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_numeric_extensions_par.h
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_numeric_extensions.h
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/algorithm
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_algorithm
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_numeric_ser.h
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/License.txt
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/omptl/omptl_algorithm_ser.h
-- Up-to-date: $SRC_DIR/build/ext_install/include/CosmoTool/.
-- Up-to-date: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier
-- Up-to-date: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/fft
-- Up-to-date: $SRC_DIR/build/ext_install/include/CosmoTool/./fourier/details
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./octTree.tcc
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./sphSmooth.tcc
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./bqueue.tcc
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./dinterpolate.tcc
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./bsp_simple.tcc
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./mykdtree.tcc
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./kdtree_leaf.tcc
-- Installing: $SRC_DIR/build/ext_install/include/CosmoTool/./sparseGrid.tcc
-- Installing: $SRC_DIR/build/ext_install/bin/simple3DFilter
-- Installing: $SRC_DIR/build/ext_install/bin/simpleDistanceFilter
[ 25%] Completed 'cosmotool'
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[ 28%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/cosmo.cpp.o
[ 28%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/physics/class_cosmo.cpp.o
[ 28%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/mcmc/state_element.cpp.o
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[ 30%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/sigcatcher.cpp.o
[ 30%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/fftw_allocator.cpp.o
[ 30%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/hdf5_error.cpp.o
[ 30%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/hdf5_type.cpp.o
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[ 33%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/memusage.cpp.o
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[ 35%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/tools/sort/peano.cpp.o
[ 35%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/ares/gibbs_messenger.cpp.o
[ 35%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/ares/powerspectrum_a_sampler.cpp.o
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[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/gig_sampler.cc.o
[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/powerspec_tools.cpp.o
[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/gridLikelihoodBase.cpp.o
[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/registry.cpp.o
[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/simpleLikelihood.cpp.o
[ 41%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/core/generate_random_field.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/hades/base_likelihood.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/hades/hades_linear_likelihood.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/borg/borg_poisson_likelihood.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/borg/borg_poisson_meta.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/borg/borg_null_likelihood.cpp.o
[ 43%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/rgen/density_sampler.cpp.o
[ 46%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/rgen/hmc/hmc_density_sampler.cpp.o
[ 46%] Building CXX object libLSS/CMakeFiles/LSSobj.dir/samplers/rgen/realhmc/hmc_density_sampler.cpp.o
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model.hpp:15,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model_capsule.hpp:5,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model_capsule.cpp:4:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model.cpp:15:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/model_io.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/data/data_representation.cpp:13:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/model_io.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/data/mixer_representation.cpp:13:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/model_io.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/data/data_representation.hpp:18,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/data/chain_transformation_representation.cpp:2:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/model_io.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/data/converters.cpp:13:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/model_io.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/data/tiledarray_representation.cpp:13:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/model_io.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/data/modelio_representation.cpp:13:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model.hpp:15,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/primordialv2.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/primordialv2.cpp:13:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model.hpp:15,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/primordial_as.hpp:13,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/primordial_as.cpp:12:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model.hpp:15,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/fnl.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/fnl.cpp:12:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/mixer.cpp:11:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model.hpp:15,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/transfer_ehuv2.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/transfer_ehuv2.cpp:13:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model.hpp:15,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/transfer_class.hpp:13,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forwards/transfer_class.cpp:12:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/chain_forward_model.cpp:12:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/branch.cpp:11:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/sum.cpp:11:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model.hpp:15,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/hades_pt.cpp:11:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/console.hpp:26,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/errors.hpp:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/tools/auto_interpolator.hpp:16,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:20,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/forward_model.hpp:15,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/hades_log.cpp:11:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/mpi/generic_mpi.hpp:13: warning: "OMPI_SKIP_MPICXX" redefined
13 | # define OMPI_SKIP_MPICXX
|
In file included from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/hdf5.h:21,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Include.h:14,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5Cpp.h:17,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/build/ext_install/include/CosmoTool/hdf5_array.hpp:51,
from /build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/work/libLSS/physics/cosmo.hpp:18:
/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1709287638750/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include/H5public.h:63: note: this is the location of the previous definition
63 | #define OMPI_SKIP_MPICXX 1
|
Aborted by AdministratorSending interrupt signal to process
Sending interrupt signal to process
x86_64-conda-linux-gnu-c++: fatal error: Terminated signal terminated program as
compilation terminated.
make[3]: *** [libLSS/CMakeFiles/LSSobj.dir/build.make:1140: libLSS/CMakeFiles/LSSobj.dir/physics/tiled_array.cpp.o] Error 1
make[3]: *** Deleting file 'libLSS/CMakeFiles/LSSobj.dir/physics/tiled_array.cpp.o'
make[3]: *** Waiting for unfinished jobs....
Terminated
make[3]: *** [libLSS/CMakeFiles/LSSobj.dir/build.make:1154: libLSS/CMakeFiles/LSSobj.dir/physics/bias/biases.cpp.o] Error 143
make[3]: *** Deleting file 'libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_qlpt.cpp.o'
make[3]: *** Deleting file 'libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_lpt.cpp.o'
make[3]: *** [libLSS/CMakeFiles/LSSobj.dir/build.make:1210: libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_qlpt.cpp.o] Terminated
make[3]: *** [libLSS/CMakeFiles/LSSobj.dir/build.make:1196: libLSS/CMakeFiles/LSSobj.dir/physics/forwards/borg_lpt.cpp.o] Terminated
make[2]: *** [CMakeFiles/Makefile2:1733: libLSS/CMakeFiles/LSSobj.dir/all] Terminated
make[1]: *** [CMakeFiles/Makefile2:7199: python/CMakeFiles/python-install.dir/rule] Error 2
make: *** [Makefile:2987: python-install] Error 2
Terminated
script returned exit code 143
Sending interrupt signal to process
[Pipeline] }
[Pipeline] // timeout
[Pipeline] }
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 966593 killed;
[ssh-agent] Stopped.
[Pipeline] // sshagent
[Pipeline] }
[Pipeline] // ansiColor
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Build MacOS-M1)
Stage "Build MacOS-M1" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Conda deploy Linux)
Stage "Conda deploy Linux" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Conda deploy MacOS-M1)
Stage "Conda deploy MacOS-M1" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
Failed in branch Matrix - PLATFORM = 'ubuntu', MPI = 'mpich', CFITSIO = '4.3', PYTHON = '3.11', HDF5 = '1.14'
{standard input}: Assembler messages:
{standard input}:310268: Warning: end of file not at end of a line; newline inserted
{standard input}:311214: Error: unknown pseudo-op: `.u'
{standard input}:311057: Error: invalid operands (*UND* and .gcc_except_table._ZN6LibLSS24GenericForegroundSamplerINS_20GenericHMCLikelihoodINS_4bias16detail_manypower9ManyPowerINS_10Combinator6LevelsIdJLm1ELm1EEEEEENS_22VoxelPoissonLikelihoodEEEE6sampleERNS_11MarkovStateE sections) for `-'
x86_64-conda-linux-gnu-c++: fatal error: Terminated signal terminated program cc1plus
compilation terminated.
make[3]: *** [libLSS/CMakeFiles/LSSobj.dir/build.make:1574: libLSS/CMakeFiles/LSSobj.dir/samplers/generic/impl_poisson.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
{standard input}: Assembler messages:
{standard input}:212422: Warning: end of file not at end of a line; newline inserted
{standard input}: Error: .size expression for _ZN6LibLSS20GenericHMCLikelihoodINS_4bias14detail_EFTBias11EFTBiasMargENS_10detail_EFT17EFTMargLikelihoodEE20updateMetaParametersERNS_11MarkovStateE does not evaluate to a constant
x86_64-conda-linux-gnu-c++: fatal error: Terminated signal terminated program cc1plus
compilation terminated.
make[3]: *** [libLSS/CMakeFiles/LSSobj.dir/build.make:1560: libLSS/CMakeFiles/LSSobj.dir/samplers/generic/impl_gaussian.cpp.o] Error 1
x86_64-conda-linux-gnu-c++: fatal error: Terminated signal terminated program cc1plus
compilation terminated.
make[3]: *** [libLSS/CMakeFiles/LSSobj.dir/build.make:1616: libLSS/CMakeFiles/LSSobj.dir/samplers/generic/impl_robust_2.cpp.o] Error 1
make[3]: *** Deleting file 'libLSS/CMakeFiles/LSSobj.dir/samplers/generic/impl_robust_2.cpp.o'
{standard input}: Assembler messages:
{standard input}:52771: Warning: end of file not at end of a line; newline inserted
x86_64-conda-linux-gnu-c++: fatal error: Terminated signal terminated program cc1plus
compilation terminated.
make[3]: *** [libLSS/CMakeFiles/LSSobj.dir/build.make:1602: libLSS/CMakeFiles/LSSobj.dir/samplers/generic/impl_robust.cpp.o] Error 1
make[3]: *** Deleting file 'libLSS/CMakeFiles/LSSobj.dir/samplers/generic/impl_robust.cpp.o'
make[2]: *** [CMakeFiles/Makefile2:1703: libLSS/CMakeFiles/LSSobj.dir/all] Error 2
make[1]: *** [CMakeFiles/Makefile2:7098: python/CMakeFiles/python-install.dir/rule] Error 2
make: *** [Makefile:2974: python-install] Error 2
Terminated
script returned exit code 143
[Pipeline] }
[Pipeline] // timeout
[Pipeline] }
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 3685981 killed;
[ssh-agent] Stopped.
[Pipeline] // sshagent
[Pipeline] }
[Pipeline] // ansiColor
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Build MacOS-M1)
Stage "Build MacOS-M1" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Conda deploy Linux)
Stage "Conda deploy Linux" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Conda deploy MacOS-M1)
Stage "Conda deploy MacOS-M1" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
Failed in branch Matrix - PLATFORM = 'ubuntu', MPI = 'nompi', CFITSIO = '4.3', PYTHON = '3.11', HDF5 = '1.14'
[Pipeline] // parallel
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] node
Running on ubuntu-athos2 in /home/jenkins-agent/work/workspace/borg_conda_release_3.3
[Pipeline] {
[Pipeline] sh
+ . /build/jenkins/miniconda3/envs/builder/bin/activate
++ _CONDA_ROOT=/build/jenkins/miniconda3/envs/builder
++ . /build/jenkins/miniconda3/envs/builder/etc/profile.d/conda.sh
+++ export CONDA_EXE=/build/jenkins/miniconda3/envs/builder/bin/conda
+++ CONDA_EXE=/build/jenkins/miniconda3/envs/builder/bin/conda
+++ export _CE_M=
+++ _CE_M=
+++ export _CE_CONDA=
+++ _CE_CONDA=
+++ export CONDA_PYTHON_EXE=/build/jenkins/miniconda3/envs/builder/bin/python
+++ CONDA_PYTHON_EXE=/build/jenkins/miniconda3/envs/builder/bin/python
+++ '[' -z '' ']'
+++ export CONDA_SHLVL=0
+++ CONDA_SHLVL=0
+++ '[' -n '' ']'
+++++ dirname /build/jenkins/miniconda3/envs/builder/bin/conda
++++ dirname /build/jenkins/miniconda3/envs/builder/bin
+++ PATH=/build/jenkins/miniconda3/envs/builder/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ export PATH
+++ '[' -z '' ']'
+++ PS1=
++ conda activate
++ local cmd=activate
++ case "$cmd" in
++ __conda_activate activate
++ '[' -n '' ']'
++ local ask_conda
+++ PS1=
+++ __conda_exe shell.posix activate
+++ /build/jenkins/miniconda3/envs/builder/bin/conda shell.posix activate
++ ask_conda='PS1='\''(base) '\''
export PATH='\''/build/jenkins/miniconda3/envs/builder/bin:/build/jenkins/miniconda3/envs/builder/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin'\''
export CONDA_PREFIX='\''/build/jenkins/miniconda3/envs/builder'\''
export CONDA_SHLVL='\''1'\''
export CONDA_DEFAULT_ENV='\''base'\''
export CONDA_PROMPT_MODIFIER='\''(base) '\''
export CONDA_EXE='\''/build/jenkins/miniconda3/envs/builder/bin/conda'\''
export _CE_M='\'''\''
export _CE_CONDA='\'''\''
export CONDA_PYTHON_EXE='\''/build/jenkins/miniconda3/envs/builder/bin/python'\'''
++ eval 'PS1='\''(base) '\''
export PATH='\''/build/jenkins/miniconda3/envs/builder/bin:/build/jenkins/miniconda3/envs/builder/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin'\''
export CONDA_PREFIX='\''/build/jenkins/miniconda3/envs/builder'\''
export CONDA_SHLVL='\''1'\''
export CONDA_DEFAULT_ENV='\''base'\''
export CONDA_PROMPT_MODIFIER='\''(base) '\''
export CONDA_EXE='\''/build/jenkins/miniconda3/envs/builder/bin/conda'\''
export _CE_M='\'''\''
export _CE_CONDA='\'''\''
export CONDA_PYTHON_EXE='\''/build/jenkins/miniconda3/envs/builder/bin/python'\'''
+++ PS1='(base) '
+++ export PATH=/build/jenkins/miniconda3/envs/builder/bin:/build/jenkins/miniconda3/envs/builder/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ PATH=/build/jenkins/miniconda3/envs/builder/bin:/build/jenkins/miniconda3/envs/builder/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ export CONDA_PREFIX=/build/jenkins/miniconda3/envs/builder
+++ CONDA_PREFIX=/build/jenkins/miniconda3/envs/builder
+++ export CONDA_SHLVL=1
+++ CONDA_SHLVL=1
+++ export CONDA_DEFAULT_ENV=base
+++ CONDA_DEFAULT_ENV=base
+++ export 'CONDA_PROMPT_MODIFIER=(base) '
+++ CONDA_PROMPT_MODIFIER='(base) '
+++ export CONDA_EXE=/build/jenkins/miniconda3/envs/builder/bin/conda
+++ CONDA_EXE=/build/jenkins/miniconda3/envs/builder/bin/conda
+++ export _CE_M=
+++ _CE_M=
+++ export _CE_CONDA=
+++ _CE_CONDA=
+++ export CONDA_PYTHON_EXE=/build/jenkins/miniconda3/envs/builder/bin/python
+++ CONDA_PYTHON_EXE=/build/jenkins/miniconda3/envs/builder/bin/python
++ __conda_hashr
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
+ conda build purge
+ local cmd=build
+ case "$cmd" in
+ __conda_exe build purge
+ /build/jenkins/miniconda3/envs/builder/bin/conda build purge
Click here to forcibly terminate running steps+ conda clean -a
+ local cmd=clean
+ case "$cmd" in
+ __conda_exe clean -a
+ /build/jenkins/miniconda3/envs/builder/bin/conda clean -a
Will remove 104 (362.7 MB) tarball(s).
Proceed ([y]/n)?
Will remove 1 index cache(s).
Proceed ([y]/n)?
Aborted by AdministratorSending interrupt signal to process
Terminated
script returned exit code 143
[Pipeline] }
[Pipeline] // node
Error when executing always post condition:
Also: org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: f18b0335-af7b-47b9-9a39-368d43d6d31b
org.jenkinsci.plugins.workflow.steps.FlowInterruptedException
at org.jenkinsci.plugins.workflow.cps.CpsFlowExecution.interrupt(CpsFlowExecution.java:1210)
at org.jenkinsci.plugins.workflow.job.WorkflowRun$2.lambda$interrupt$0(WorkflowRun.java:397)
at jenkins.security.ImpersonatingScheduledExecutorService$1.run(ImpersonatingScheduledExecutorService.java:67)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withCredentials
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: ABORTED
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